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R3D Align web server for global nucleotide to nucleotide alignments of RNA 3D structures (2013)
BibTeX
@MISC{Rahrig13r3dalign,
author = {Ryan R. Rahrig and Anton I. Petrov and Neocles B. Leontis and Craig L. Zirbel},
title = {R3D Align web server for global nucleotide to nucleotide alignments of RNA 3D structures},
year = {2013}
}
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Abstract
The R3D Align web server provides online access to ‘RNA 3D Align ’ (R3D Align), a method for producing accurate nucleotide-level structural alignments of RNA 3D structures. The web server provides a streamlined and intuitive interface, input data valid-ation and output that is more extensive and easier to read and interpret than related servers. The R3D Align web server offers a unique Gallery of Featured Alignments, providing immediate access to pre-computed alignments of large RNA 3D struc-tures, including all ribosomal RNAs, as well as guidance on effective use of the server and inter-pretation of the output. By accessing the non-redundant lists of RNA 3D structures provided by the Bowling Green State University RNA group, R3D Align connects users to structure files in the same equivalence class and the best-modeled rep-resentative structure from each group. The R3D Align web server is freely accessible at
