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RALEE–RNA ALignment Editor in Emacs (2005)
| Venue: | Bioinformatics |
| Citations: | 28 - 2 self |
BibTeX
@ARTICLE{Griffiths-jones05ralee–rnaalignment,
author = {Sam Griffiths-jones},
title = {RALEE–RNA ALignment Editor in Emacs},
journal = {Bioinformatics},
year = {2005},
volume = {21}
}
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Abstract
Summary: Production of high quality multiple sequence alignments of structured RNAs relies on an iterative combination of manual editing and structure prediction. An essential feature of an RNA alignment editor is the facility to mark-up the alignment based on how it matches a given secondary structure prediction, but few available alignment editors offer such a feature. The RALEE (RNA ALignment Editor in Emacs) tool provides a simple environment for RNA multiple sequence alignment editing, including structure-specific colour schemes, utilizing helper applications for structure prediction and many more conventional editing functions. This is accomplished by extending the commonly used text editor, Emacs, which is available for Linux, most UNIX systems, Windows and
Keyphrases
ralee rna alignment editor structure prediction rna alignment editor high quality multiple sequence alignment unix system essential feature helper application rna multiple sequence alignment editing simple environment iterative combination manual editing text editor conventional editing function structure-specific colour scheme secondary structure prediction structured rna relies available alignment editor
