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An Overview of Models and Standards of Processes in the SE, SwE And IS Disciplines
- In A. Cater-Steel (Ed.), Information Technology Governance and Service Management: Frameworks and Adaptations (pp. 371–387). IGI Publishing
, 2009
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PDBTool: A Prototype Object Oriented Toolkit for Protein Structure Verification
, 1992
"... The Protein Data Bank (PDB) is a large and rapidly growing standard repository of complex biological macromolecules. Existing software tools for the PDB, including storage management, are quite inflexible and work in isolation. We are using object-oriented design and object-oriented database techniq ..."
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The Protein Data Bank (PDB) is a large and rapidly growing standard repository of complex biological macromolecules. Existing software tools for the PDB, including storage management, are quite inflexible and work in isolation. We are using object-oriented design and object-oriented database techniques in the construction of a toolbox for the PDB. The main components of the object-oriented toolbox include: (1) a uniform graphical user interface for fast, intuitive, and interactive access to the PDB; (2) several interoperable storage managers, compatible with present and future PDB formats; (3) a new set of efficient, modular, and flexible software tools. The toolbox is being implemented in C ++ . We describe our experience in the the implementation and use of the first prototype, PDBTool, to display, manipulate, and verify the structure of proteins. This project is a successful collaboration of a Biophysics and a Computer Science research and development team. 1 partially supported...
