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Nonequilibrium fluctuations in small systems: From physics to biology (0)

by F Ritort
Venue:Adv. Chem. Phys
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Stochastic thermodynamics, fluctuation theorems . . .

by Udo Seifert , 2012
"... ..."
Abstract - Cited by 40 (1 self) - Add to MetaCart
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Fluctuation-Dissipation: Response Theory in Statistical Physics

by Umberto Marini Bettolo Marconi, Andrea Puglisi , Lamberto Rondoni , Angelo Vulpiani - PHYSICS REPORTS 461 (2008) 111-195 , 2008
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Abstract - Cited by 26 (2 self) - Add to MetaCart
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Fluctuation relations for diffusion process

by Raphaël Chetrite - Commun. Math. Phys
"... The paper presents a unified approach to different fluctuation relations for classical nonequilibrium dynamics described by diffusion processes. Such relations compare the statistics of fluctuations of the entropy production or work in the original process to the similar statistics in the time-rever ..."
Abstract - Cited by 21 (6 self) - Add to MetaCart
The paper presents a unified approach to different fluctuation relations for classical nonequilibrium dynamics described by diffusion processes. Such relations compare the statistics of fluctuations of the entropy production or work in the original process to the similar statistics in the time-reversed process. The origin of a variety of fluctuation relations is traced to the use of different time reversals. It is also shown how the application of the presented approach to the tangent process describing the joint evolution of infinitesimally close trajectories of the original process leads to a multiplicative extension of the fluctuation relations. 1
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..., see [52] for a recent comparison. The simplicity of the Jarzynski equality and its possible applications to measurements of free-energy landscape for small systems attracted a lot of attention, see =-=[71, 72]-=- and the references therein. The first studies of fluctuation relations dealt with the deterministic dynamics of finitely-many degrees of freedom. Such dynamics may be also used to model systems inter...

Refined second law of thermodynamics for fast random processes. arXiv: 1201.3207

by E Aurell, K Gawedzki, C Mej́ıa-Monasterio, R Mohayaee, P Muratore-Ginanneschi , 2012
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EPJ manuscript No.

by unknown authors , 809
"... (will be inserted by the editor) Kinesin and the Crooks fluctuation theorem ..."
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(will be inserted by the editor) Kinesin and the Crooks fluctuation theorem
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...ome point. But when we focus on phenomena at the molecular level, it is the thermodynamics of small systems we are talking about, not the familiar macroscopic thermodynamics of heat engines and stars =-=[6]-=-. The analysis of molecular motors is a case in point. Analyzing engines is what thermodynamics is good for; it2 Esteban Calzetta: Kinesin and the Crooks fluctuation theorem was invented for just thi...

EPJ manuscript No. (will be inserted by the editor)

by The Crooks Theorem, Esteban Calzetta, Depto De Física , 809
"... Abstract. The thermal efficiency of the kinesin cycle at stalling is presently a matter of some debate, with ..."
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Abstract. The thermal efficiency of the kinesin cycle at stalling is presently a matter of some debate, with
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...ome point. But when we focus on phenomena at the molecular level, it is the thermodynamics of small systems we are talking about, not the familiar macroscopic thermodynamics of heat engines and stars =-=[6]-=-. we physicists are learning quite a lot in the process.2 Esteban Calzetta: Kinesin and the Crooks theorem The analysis of molecular motors is a case in point. Analyzing engines is what thermodynamic...

Fluctuation-Dissipation: Response Theory in Statistical Physics

by Umberto Marini, Bettolo Marconi, Andrea Puglisi B, Lamberto Rondoni C, Angelo Vulpiani D , 803
"... General aspects of the Fluctuation-Dissipation Relation (FDR), and Response Theory are considered. After analyzing the conceptual and historical relevance of fluctuations in statistical mechanics, we illustrate the relation between the relaxation of spontaneous fluctuations, and the response to an e ..."
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General aspects of the Fluctuation-Dissipation Relation (FDR), and Response Theory are considered. After analyzing the conceptual and historical relevance of fluctuations in statistical mechanics, we illustrate the relation between the relaxation of spontaneous fluctuations, and the response to an external perturbation. These studies date back to Einstein’s work on Brownian Motion, were continued by Nyquist and Onsager and culminated in Kubo’s linear response theory. The FDR has been originally developed in the framework of statistical mechanics of Hamiltonian systems, nevertheless a generalized FDR holds under rather general hypotheses, regardless of the Hamiltonian, or equilibrium nature of the system. In the last decade, this subject was revived by the works on Fluctuation Relations (FR) concerning far from equilibrium systems. The connection of these works with large deviation theory is analyzed. Some examples, beyond the standard applications of statistical mechanics, where fluctuations play a major role are discussed: fluids, granular media, nano-systems
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... but practically irrelevant, in many-particles systems. Differently, fluctuations are not negligible in small systems or in small parts of macroscopic systems, where they might be directly observable =-=[142,143]-=-. Nano-technological devices are then expected to behave differently from ther71modynamic systems. Among them, we find, for instance, quantum dots, carbon nano-tubes and molecular machines, whose siz...

TOPICAL REVIEW

by F. Ritort , 2006
"... Single-molecule experiments in biological physics: methods and applications. ..."
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Single-molecule experiments in biological physics: methods and applications.
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...le techniques (for example, laser tweezers [25]) or excellent review journals [26]. Finally, reviews about the usefulness of SME to investigate the thermodynamics of molecular systems can be found in =-=[27, 28, 29]-=-. 2. Why single molecules? SME are central to biological physics research [30]. These offer a complementary yet different perspective to understand molecular processes. What are the advantages of SME ...

Fluctuation Relations for Diffusions Thermally Driven by a Non-Stationary Bath

by Raphaël Chetrite , 2009
"... In the context of the dynamical evolution in a non-stationary thermal bath, we construct a family of fluctuation relations for the entropy production that are not verified by the work performed on the system. We exhibit uctuation relations which are global versions either of the generalized Fluctuat ..."
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In the context of the dynamical evolution in a non-stationary thermal bath, we construct a family of fluctuation relations for the entropy production that are not verified by the work performed on the system. We exhibit uctuation relations which are global versions either of the generalized Fluctuation-Dissipation Theorem around a non-equilibrium diffusion or of the usual Fluctuation-Dissipation Theorem for energy resulting from a pulse of temperature.
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...holds for the distribution of work performed on a system [25, 10, 45, 5] which evolves in an equilibrium bath. This developments had an important impact on the physics of nanosystems and biomolecules =-=[43]-=-. Here, we examine the question of the extension of such relations to an evolution in a non-equilibrium medium. More precisely, we consider systems placed in the thermal bath that is non-stationary, a...

LETTERS

by Amar Nath Gupta, Abhilash Vincent, Krishna Neupane, Hao Yu, Michael T. Woodside , 2011
"... Experimental validation of free-energy-landscape reconstruction from non-equilibrium single-molecule force spectroscopy measurements ..."
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Experimental validation of free-energy-landscape reconstruction from non-equilibrium single-molecule force spectroscopy measurements
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