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2012a: Causal discovery for climate research using graphical models

by Imme Ebert-Uphoff , Y I Deng
Venue:J. Climate
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Article Reliability of Inference of Directed Climate Networks Using Conditional Mutual Information

by Jaroslav Hlinka, David Hartman, Martin Vejmelka, Jakob Runge, Norbert Marwan, Jürgen Kurths , 2013
"... entropy ..."
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...as been recently suggested that data-driven detection of climate causality networks could be used for deriving hypotheses about causal relationships between prominent modes of atmospheric variability =-=[12,13]-=-. The family of causality methods include linear approaches such as Granger causality analysis [14], as well as more general nonlinear methods. A prominent representative of nonlinear causality assess...

Causal Discovery from Spatio-Temporal Data with Applications to Climate Science

by Imme Ebert-Uphoff , Yi Deng
"... Abstract-Causal discovery algorithms have been used to identify potential cause-effect relationships from observational data for decades. Recently more applications are emerging, for example in climate science, that extend over large spatial domains and require temporal models. This paper first rev ..."
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Abstract-Causal discovery algorithms have been used to identify potential cause-effect relationships from observational data for decades. Recently more applications are emerging, for example in climate science, that extend over large spatial domains and require temporal models. This paper first reviews how the causal discovery problem can be set up for such spatiotemporal problems using constraint-based structure learning, then discusses pitfalls we encountered and some solutions we developed. In particular, we consider how to handle temporal and spatial boundaries (which often result in causal sufficiency violations) and discuss the effects of temporal resolution and grid irregularities on the resulting model.
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...s apart and a significance value of α = 0.001 for the conditional independence tests (Fisher Z-tests), the PC algorithm yielded the temporal model shown in Fig. 4. Fig. 5 is a summary graph with the strongest connections from Fig. 4. The numbers next to the arrows indicate the delay in days from potential cause to effect (they are multiples of 3, because we used D = 3). There are a few arrows hidden behind other blocks in Fig. 4. Namely, each compound index, WPO, EPO, PNA and NAO, actually affects itself strongly for 3-6 days, as shown in the self-loops in Fig. 5. For more interpretation, see [20]. Application 2 - Graphs of information flow: One of the most complex applications of causal discovery in climate science is to track the pathways of physical interaction around the globe. In order to do that we define a grid around the globe and evaluate an atmospheric field (such as temperature or geopotential height) at all grid points, which provides time series data at all grid points. Our approach is to then use the temporal version of PC stable to identify the strongest pathways of interactions around the globe based on the time series data [21]. Gaussian graphical models present an alt...

Granger Causality for Ill-Posed Problems: Ideas, Methods, and Application in Life Sciences

by Kateřina Hlaváčková-schindler, Valeriya Naumova, Sergiy Pereverzyev
"... Granger causality, based on a vector autoregressive model, is one of the most popular methods for uncovering the temporal dependencies between time series. The application of Granger causality to detect inference among a large number of variables (such as genes) requires a variable selection procedu ..."
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Granger causality, based on a vector autoregressive model, is one of the most popular methods for uncovering the temporal dependencies between time series. The application of Granger causality to detect inference among a large number of variables (such as genes) requires a variable selection procedure. To address the lack of informative data, so-called regularization procedures are applied. In this chapter, we review current literature on Granger causality with Lasso regularization techniques for ill-posed problems (i.e., problems with multiple solutions). We discuss regularization procedures for inverse and ill-posed problems and present our recent approaches. These approaches are evaluated in a case study on gene regulatory networks reconstruction.

of climate data

by Jonathan F. Donges, Irina Petrova, Er Loew, Norbert Marwan, Jürgen Kurths , 2013
"... between eigen and complex network techniques for the statistical analysis ..."
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between eigen and complex network techniques for the statistical analysis

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by P. K. Snyder, K. Steinhaeuser, D. Wang, D. Wuebbles , 2014
"... www.nonlin-processes-geophys.net/21/777/2014/ doi:10.5194/npg-21-777-2014 © Author(s) 2014. CC Attribution 3.0 License. Toward enhanced understanding and projections of climate extremes using physics-guided data mining techniques ..."
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www.nonlin-processes-geophys.net/21/777/2014/ doi:10.5194/npg-21-777-2014 © Author(s) 2014. CC Attribution 3.0 License. Toward enhanced understanding and projections of climate extremes using physics-guided data mining techniques
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...ional and geographically distributed climate data with complex dependence structures. Network-based graphical models have been used to discover causality among different modes of climate variability (=-=Ebert-Uphoff and Deng, 2012-=-; Runge et al., 2009). Applications of methods in nonlinear data sciences, from complex networks (Steinhaeuser et al., 2011a) to multifractals (García-Marín et al., 2013; Muzy et al., 2006) and dynami...

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