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Developmental Biology of wood formation- Finding regulatory factors through functional genomics
, 2003
"... The wood-forming vascular cambium is responsible for the production of a large part of the biomass on this planet. Yet, there is only limited knowledge on how cell proliferation and differentiation in the cambial meristem are regulated. In this thesis the wood-forming tissues of aspen were used as a ..."
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The wood-forming vascular cambium is responsible for the production of a large part of the biomass on this planet. Yet, there is only limited knowledge on how cell proliferation and differentiation in the cambial meristem are regulated. In this thesis the wood-forming tissues of aspen were used as a model system to identify and characterize molecular factors related to cambial meristem activity. An important regulator of cambial meristem activity is the plant hormone auxin. As polar transport is crucial for the delivery of auxin to the cambial zone, we identified homologues of known regulators of polar auxin transport and described their regulation by environmental and developmental factors. Translating changes in auxin concentration into changes in gene expression involves members of the Aux/IAA gene family. Aspen homologues of Aux/IAA genes were cloned and found to be expressed in a highly tissue-specific fashion, which is further influenced by developmental events and changes in the environment. A major response of trees to environmental changes is the suspension of meristematic growth during winter dormancy. A comparison of gene expression in active and dormant cambia revealed dramatic changes in the transcriptome including the expression of many cold
Toward the identification and regulation of the Arabidopsis thaliana ABI3 regulon
- Nucleic Acids Research
, 2012
"... The plant-specific, B3 domain-containing transcrip-tion factor ABSCISIC ACID INSENSITIVE3 (ABI3) is an essential component of the regulatory network controlling the development and maturation of the Arabidopsis thaliana seed. Genome-wide chromatin immunoprecipitation (ChIP-chip), transcriptome analy ..."
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The plant-specific, B3 domain-containing transcrip-tion factor ABSCISIC ACID INSENSITIVE3 (ABI3) is an essential component of the regulatory network controlling the development and maturation of the Arabidopsis thaliana seed. Genome-wide chromatin immunoprecipitation (ChIP-chip), transcriptome analysis, quantitative reverse transcriptase–poly-merase chain reaction and a transient promoter ac-tivation assay have been combined to identify a set of 98 ABI3 target genes. Most of these presumptive ABI3 targets require the presence of abscisic acid for their activation and are specifically expressed during seed maturation. ABI3 target promoters are enriched for G-box-like and RY-like elements. The general occurrence of these cis motifs in non-ABI3 target promoters suggests the existence of as yet unidentified regulatory signals, some of which may be associated with epigenetic control. Several members of the ABI3 regulon are also regulated by other transcription factors, including the seed-specific, B3 domain-containing FUS3 and LEC2. The data strengthen and extend the notion that ABI3 is essential for the protection of embryonic structures from desiccation and raise pertinent questions regarding the specificity of promoter recognition.
Short Day–Mediated Cessation of Growth Requires the Downregulation of AINTEGUMENTALIKE1 Transcription Factor in Hybrid Aspen
"... Day length is a key environmental cue regulating the timing of major developmental transitions in plants. For example, in perennial plants such as the long-lived trees of the boreal forest, exposure to short days (SD) leads to the termination of meristem activity and bud set (referred to as growth c ..."
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Day length is a key environmental cue regulating the timing of major developmental transitions in plants. For example, in perennial plants such as the long-lived trees of the boreal forest, exposure to short days (SD) leads to the termination of meristem activity and bud set (referred to as growth cessation). The mechanism underlying SD–mediated induction of growth cessation is poorly understood. Here we show that the AIL1-AIL4 (AINTEGUMENTALIKE) transcription factors of the AP2 family are the downstream targets of the SD signal in the regulation of growth cessation response in hybrid aspen trees. AIL1 is expressed in the shoot apical meristem and leaf primordia, and exposure to SD signal downregulates AIL1 expression. Downregulation of AIL gene expression by SDs is altered in transgenic hybrid aspen plants that are defective in SD perception and/or response, e.g. PHYA or FT overexpressors. Importantly, SD–mediated regulation of growth cessation response is also affected by overexpression or downregulation of AIL gene expression. AIL1 protein can interact with the promoter of the key cell cycle genes, e.g. CYCD3.2, and downregulation of the expression of D-type cyclins after SD treatment is prevented by AIL1 overexpression. These data reveal that execution of SD–mediated growth cessation response requires the downregulation of AIL gene expression. Thus, while early acting components like PHYA and the CO/ FT regulon are conserved in day-length regulation of flowering time and growth cessation between annual and perennial plants, signaling pathways downstream of SD perception diverge, with AIL transcription factors being novel targets of the
unknown title
, 2009
"... Endoplasmic reticulum-localized small heat shock protein that accumulates in mulberry tree (Morus bombycis Koidz.) during seasonal cold acclimation is responsive to abscisic acid ..."
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Endoplasmic reticulum-localized small heat shock protein that accumulates in mulberry tree (Morus bombycis Koidz.) during seasonal cold acclimation is responsive to abscisic acid
Metabolism-Related Genes Suggests Similarities and Differences Between
, 2016
"... These authors have contributed equally to this work as co-first author. Specialty section: This article was submitted to ..."
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These authors have contributed equally to this work as co-first author. Specialty section: This article was submitted to
ETS de Ingenieros de Montes. Universidad Politécnica de Madrid.
"... Dormancy is an adaptive mechanism that enables woody plants to survive the freezing temperatures of winter. This complex process is characterized by the cessation of meristem activity, which is accompanied by winter bud set, extensive metabolic remodelling, an acquired high tolerance to cold and, in ..."
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Dormancy is an adaptive mechanism that enables woody plants to survive the freezing temperatures of winter. This complex process is characterized by the cessation of meristem activity, which is accompanied by winter bud set, extensive metabolic remodelling, an acquired high tolerance to cold and, in deciduous trees, by leaf senescence and abscission. The induction of dormancy occurs in response to seasonal environmental signals. In most woody plants, shortening of the photoperiod induces growth cessation, bud set, and some degree of cold acclimation. The subsequent drop in temperature then leads to a greater tolerance to cold and leaf fall. Experimental evidence indicates that the phytochrome system plays an important role as a day length sensor, and it has been recently reported that in poplar (Populus tremula x tremuloides), the photoperiodic control of dormancy induction is driven by a molecular mechanism that shares components with the mechanism of the photoperiodic control of flowering time in Arabidopsis. In contrast, the effects of low temperatures are less well understood. Nonetheless, it has been established that the chestnut (Castanea sativa Mill.) circadian molecular clock is disrupted both during winter and in response to cold, with presumable consequences on the general physiology of the plant. However, there is no direct evidence so far for its role in dormancy regulation. Additional key words: bud set, circadian clock, cold acclimation, endodormancy, photoperiodism, phytochrome.
