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96
The SWISS-PROT protein sequence data bank and its supplement TrEMBL in 1999
- Nucleic Acids Res
, 1999
"... SWISS-PROT is a curated protein sequence database which strives to provide a high level of annotation (such as the description of the function of a protein, its domain structure, post-translational modifications, variants, etc.), a minimal level of redundancy and high level of integration with other ..."
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Cited by 624 (5 self)
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with other databases. Recent developments of the database include: cross-references to additional databases; a variety of new documentation files and improvements to TrEMBL, a computer annotated supplement to SWISS-PROT. TrEMBL consists of entries in SWISS-PROT-like format derived from the translation of all
The SWISS-PROT protein sequence database and its supplement TrEMBL in 2000
- Nucleic Acids Res
, 2000
"... SWISS-PROT is a curated protein sequence database which strives to provide a high level of annotation (such as the description of the function of a protein, its domains structure, post-translational modifications, variants, etc.), a minimal level of redundancy and high level of integration with othe ..."
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Cited by 773 (21 self)
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with other databases. Recent developments of the database include format and content enhancements, cross-references to additional databases, new documentation files and improvements to TrEMBL, a computer-annotated supplement to SWISS-PROT. TrEMBL consists of entries in SWISS-PROT-like format derived from
trome, trEST and trGEN: databases of predicted protein sequences
- Nucleic Acids Res
, 2004
"... We previously introduced two new protein data-bases (trEST and trGEN) of hypothetical protein sequences predicted from EST and HTG sequences, respectively. Here, we present the updates made on these two databases plus a new database (trome), which uses alignments of EST data to HTG or full genomes t ..."
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Cited by 10 (4 self)
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to generate virtual transcripts and coding sequences. This new database is of higher quality and since it contains the information in a much denser format it is of much smaller size. These new databases are in a Swiss-Prot-like format and are updated on a weekly basis (trEST and trGEN) or every 3 months
The Universal Protein Resource (UniProt): an expanding universe of protein information
- Nucleic Acids Res
, 2006
"... The Universal Protein Resource (UniProt) provides a central resource on protein sequences and functional annotation with three database components, each addressing a key need in protein bioinformatics. The UniProt Knowledgebase (UniProtKB), compris-ing the manually annotated UniProtKB/Swiss-Prot sec ..."
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Cited by 302 (20 self)
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The Universal Protein Resource (UniProt) provides a central resource on protein sequences and functional annotation with three database components, each addressing a key need in protein bioinformatics. The UniProt Knowledgebase (UniProtKB), compris-ing the manually annotated UniProtKB/Swiss-Prot
R.: IntAct: an open source molecular interaction database. Nucleic Acids Res., (2004) 32 Database issue D452-D455
"... IntAct provides an open source database and toolkit for the storage, presentation and analysis of protein interactions. The web interface provides both textual and graphical representations of protein interactions, and allows exploring interaction net-works in the context of the GO annotations of th ..."
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Cited by 213 (13 self)
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of the interacting proteins. A web service allows direct computational access to retrieve interaction net-works in XML format. IntAct currently contains ~2200 binary and complex interactions imported from the literature and curated in collaboration with the Swiss-Prot team, making intensive use of con
Boomerang: Resourceful lenses for string data
, 2007
"... A lens is a bidirectional program. When read from left to right, it denotes an ordinary function that maps inputs to outputs. When read from right to left, it denotes an “update translator ” that takes an input together with an updated output and produces a new input that reflects the update. Many v ..."
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Cited by 82 (14 self)
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and implementation of Boomerang, a full-blown bidirectional programming language with dictionary lenses at its core. We have used Boomerang to build transformers for complex real-world data formats including the SwissProt genomic database. We formalize the essential property of resourcefulness—the correct use
Cluster formation in complex multi-scale systems
- Proc. Royal Soc. 461
, 2005
"... Abstract: Based on the ordering and competition of length scales in complex multi-scale systems, it is shown how clustering of active quantities into concentrated sets, like bubbles in a Swiss cheese, is a generic property that dominates the intermittent structure. The halo-like surfaces of these cl ..."
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Cited by 3 (1 self)
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Abstract: Based on the ordering and competition of length scales in complex multi-scale systems, it is shown how clustering of active quantities into concentrated sets, like bubbles in a Swiss cheese, is a generic property that dominates the intermittent structure. The halo-like surfaces
ProRule: a new database containing functional and structural information
- on PROSITE profiles,” Bioinformatics
, 2005
"... annotation Motivation: Increase the discriminatory power of PROSITE profiles to facilitate function determination and provide biologically relevant information about domains detected by profiles for the annotation of proteins. Summary: We have created a new database, ProRule, which contains addition ..."
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Cited by 11 (8 self)
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Swiss-Prot knowledgebase. ProRule also contains information about the domain detected by the profile in the Swiss-Prot line format. Hence, ProRule can be used to make Swiss-Prot annotation more homogeneous and consistent. The format of ProRule can be extended to provide information about combination
Provenance and evidence in uniprotkb
- In Proceedings of the 3rd International Workshop on Semantic Web Applications and Tools for the Life Sciences
"... Abstract. The primary mission of UniProt is to support biological re-search by maintaining a stable, comprehensive, fully classified, richly and accurately annotated protein sequence knowledgebase, with exten-sive cross-references to external resources, that is freely available to the scientific com ..."
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Cited by 2 (0 self)
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KB records it. 1 The UniProt Knowledgebase The UniProt Knowledgebase (UniProtKB) [1] consists of two parts: UniProtKB/ Swiss-Prot, containing manually annotated records describing proteins with in-formation extracted from the scientific literature and curator-evaluated com-putational analysis, and UniProt
REVISITING ”MOTHERS AND SONS”: Preference Formation and Female Labor Force in Switzerland
, 2009
"... In this paper I analyze the interrelation between marriage choice and female labor supply decision. Following Fernández, Fogli and Olivetti (2004), I argue that the recent changes in the female labor market participation rate are driven by the formation of men’s preferences and gender-role attitude ..."
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In this paper I analyze the interrelation between marriage choice and female labor supply decision. Following Fernández, Fogli and Olivetti (2004), I argue that the recent changes in the female labor market participation rate are driven by the formation of men’s preferences and gender
Results 1 - 10
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96