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24,292
Paml 4: Phylogenetic analysis by maximum likelihood
- Mol. Biol. Evol
, 2007
"... PAML, currently in version 4, is a package of programs for phylogenetic analyses of DNA and protein sequences using maximum likelihood (ML). The programs may be used to compare and test phylogenetic trees, but their main strengths lie in the rich repertoire of evolutionary models implemented, which ..."
Abstract
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Cited by 1201 (28 self)
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phylogenetic comparison of protein-coding genes, reconstruction of ancestral genes and proteins for molecular restoration studies of extinct life forms, combined analysis of heterogeneous data sets from multiple gene loci, and estimation of species divergence times incorporating uncertainties in fossil
MEGA5: Molecular evolutionary genetics analysis using maximum . . .
, 2011
"... Comparative analysis of molecular sequence data is essential for reconstructing the evolutionary histories of species and inferring the nature and extent of selective forces shaping the evolution of genes and species. Here, we announce the release of Molecular Evolutionary Genetics Analysis version ..."
Abstract
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Cited by 7284 (25 self)
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Comparative analysis of molecular sequence data is essential for reconstructing the evolutionary histories of species and inferring the nature and extent of selective forces shaping the evolution of genes and species. Here, we announce the release of Molecular Evolutionary Genetics Analysis version
Human domination of Earth’s ecosystems
- Science
, 1997
"... Human alteration of Earth is substantial and growing. Between one-third and one-half interact with the atmosphere, with aquatic of the land surface has been transformed by human action; the carbon dioxide con- systems, and with surrounding land. Morecentration in the atmosphere has increased by near ..."
Abstract
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Cited by 609 (7 self)
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rironmental change. is put to use by humanity; and about one-quarter of the bird species on Earth have been The measurement of land transformadriven to extinction. By these and other standards, it is clear that we live on a human- tion on a global scale is challenging; changdominated planet. es can
Estimation of the number of nucleotide substitutions in the control region of mitochondrial DNA in humans and chimpanzees.
- Mol Biol Evol
, 1993
"... Examining the pattern of nucleotide substitution for the control region of mitochondrial DNA ( mtDNA ) in humans and chimpanzees, we developed a new mathematical method for estimating the number of transitional and transversional substitutions per site, as well as the total number of nucleotide sub ..."
Abstract
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Cited by 925 (4 self)
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substitutions. In this method, excess transitions, unequal nucleotide frequencies, and variation of substitution rate among different sites are all taken into account. Application of this method to human and chimpanzee data suggested that the transition / transversion ratio for the entire control region was -15
Financial Dependence and Growth
- American Economic Review
, 1998
"... This paper examines whether nancial development facilitates economic growth by scrutinizing one rationale for such a relationship; that nancial development reduces the costs of external nance to rms. Speci cally, we ask whether industrial sectors that are relatively more in need of external nance de ..."
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Cited by 1086 (26 self)
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This paper examines whether nancial development facilitates economic growth by scrutinizing one rationale for such a relationship; that nancial development reduces the costs of external nance to rms. Speci cally, we ask whether industrial sectors that are relatively more in need of external nance
Aging: a theory based on free radical and radiation chemistry
- J Gerontol
, 1956
"... The phenomenon of growth, decline and death-aging-has been the source of consider-able speculation (1, 8, 10). This cycle seems to be a more or less direct function of the meta-bolic rate and this in turn depends on the species (animal or plant) on which are super-imposed the factors of heredity and ..."
Abstract
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Cited by 637 (2 self)
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The phenomenon of growth, decline and death-aging-has been the source of consider-able speculation (1, 8, 10). This cycle seems to be a more or less direct function of the meta-bolic rate and this in turn depends on the species (animal or plant) on which are super-imposed the factors of heredity
Empirical Bayes Analysis of a Microarray Experiment
- Journal of the American Statistical Association
, 2001
"... Microarrays are a novel technology that facilitates the simultaneous measurement of thousands of gene expression levels. A typical microarray experiment can produce millions of data points, raising serious problems of data reduction, and simultaneous inference. We consider one such experiment in whi ..."
Abstract
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Cited by 492 (20 self)
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simultaneous inferences concerning which genes were affected by the radiation. Although our focus is on one speci � c experiment, the proposed methods can be applied quite generally. The empirical Bayes inferences are closely related to the frequentist false discovery rate (FDR) criterion. 1.
Predictive regressions
- Journal of Financial Economics
, 1999
"... When a rate of return is regressed on a lagged stochastic regressor, such as a dividend yield, the regression disturbance is correlated with the regressor's innovation. The OLS estimator's "nite-sample properties, derived here, can depart substantially from the standard regression set ..."
Abstract
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Cited by 466 (20 self)
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When a rate of return is regressed on a lagged stochastic regressor, such as a dividend yield, the regression disturbance is correlated with the regressor's innovation. The OLS estimator's "nite-sample properties, derived here, can depart substantially from the standard regression
A biochemical model of photosynthetic CO2 assimilation in leaves of C3 species
- Planta
, 1980
"... Abstract. Various aspects of the biochemistry of photosynthetic carbon assimilation in C3 plants are integrated into a form compatible with studies of gas exchange in leaves. These aspects include the kinetic properties of ribulose bisphosphate carboxylase-oxygenase; the requirements of the photosyn ..."
Abstract
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Cited by 449 (2 self)
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be com-pared include those of the temperature and partial pressure of CO2(p(CO2) ) dependencies of quantum yield, the variation of compensation point with tem-perature and partial pressure of O2(p(O2)), the de-pendence of net CO 2 assimilation rate on p(CO2) and irradiance, and the influence of p(CO2
Efficient exact stochastic simulation of chemical systems with many species and many channels
- J. Phys. Chem. A
, 2000
"... There are two fundamental ways to view coupled systems of chemical equations: as continuous, represented by differential equations whose variables are concentrations, or as discrete, represented by stochastic processes whose variables are numbers of molecules. Although the former is by far more comm ..."
Abstract
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Cited by 427 (5 self)
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common, systems with very small numbers of molecules are important in some applications (e.g., in small biological cells or in surface processes). In both views, most complicated systems with multiple reaction channels and multiple chemical species cannot be solved analytically. There are exact numerical
Results 1 - 10
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24,292