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11,244
Fast and accurate short read alignment with Burrows-Wheeler transform
- BIOINFORMATICS, 2009, ADVANCE ACCESS
, 2009
"... Motivation: The enormous amount of short reads generated by the new DNA sequencing technologies call for the development of fast and accurate read alignment programs. A first generation of hashtable based methods has been developed, including MAQ, which is accurate, feature rich and fast enough to a ..."
Abstract
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Cited by 2096 (24 self)
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Motivation: The enormous amount of short reads generated by the new DNA sequencing technologies call for the development of fast and accurate read alignment programs. A first generation of hashtable based methods has been developed, including MAQ, which is accurate, feature rich and fast enough
Base-calling of automated sequencer traces using phred. I. Accuracy Assessment
- GENOME RES
, 1998
"... The availability of massive amounts of DNA sequence information has begun to revolutionize the practice of biology. As a result, current large-scale sequencing output, while impressive, is not adequate to keep pace with growing demand and, in particular, is far short of what will be required to obta ..."
Abstract
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Cited by 1653 (4 self)
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The availability of massive amounts of DNA sequence information has begun to revolutionize the practice of biology. As a result, current large-scale sequencing output, while impressive, is not adequate to keep pace with growing demand and, in particular, is far short of what will be required
genome-wide short sequence oligonucleotide arrays
, 2009
"... genome-wide short sequence oligonucleotide arrays ..."
On the Kolmogorov-Chaitin Complexity for short sequences
, 2007
"... A drawback to Kolmogorov-Chaitin complexity (K) is that it is uncomputable in general, and that limits its range of applicability. Another critique concerns the dependence of K on a particular universal Turing machine U for which predictions for short sequences-shorter for example than typical compi ..."
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Cited by 18 (14 self)
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A drawback to Kolmogorov-Chaitin complexity (K) is that it is uncomputable in general, and that limits its range of applicability. Another critique concerns the dependence of K on a particular universal Turing machine U for which predictions for short sequences-shorter for example than typical
Short sequence-paper
, 1999
"... Characterisation, chromosomal localisation and expression of the mouse ..."
Short sequence-paper
, 1999
"... Uncoupling protein 2 from carp and zebra¢sh, ectothermic vertebrates ..."
of short sequence Duplications
"... This is an open access article. Unrestricted non-commercial use is permitted provided the original work is properly cited. Open Access Full open access to this and thousands of other papers at ..."
Abstract
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This is an open access article. Unrestricted non-commercial use is permitted provided the original work is properly cited. Open Access Full open access to this and thousands of other papers at
Learning Stochastic Logic Programs
, 2000
"... Stochastic Logic Programs (SLPs) have been shown to be a generalisation of Hidden Markov Models (HMMs), stochastic context-free grammars, and directed Bayes' nets. A stochastic logic program consists of a set of labelled clauses p:C where p is in the interval [0,1] and C is a first-order r ..."
Abstract
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Cited by 1194 (81 self)
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functions written in Prolog. It is shown that maximising the Bayesian posterior function involves nding SLPs with short derivations of the examples. Search pruning with the Bayesian evaluation function is carried out in the same way as in previous versions of CProgol. The system is demonstrated
Maximum entropy modeling of short sequence motifs with applications to RNA splicing signals
- J. Comput. Biol
, 2004
"... ..."
Intrusion Detection using Sequences of System Calls
- Journal of Computer Security
, 1998
"... A method is introducted for detecting intrusions at the level of privileged processes. Evidence is given that short sequences of system calls executed by running processes are a good discriminator between normal and abnormal operating characteristics of several common UNIX programs. Normal behavio ..."
Abstract
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Cited by 396 (15 self)
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A method is introducted for detecting intrusions at the level of privileged processes. Evidence is given that short sequences of system calls executed by running processes are a good discriminator between normal and abnormal operating characteristics of several common UNIX programs. Normal
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