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Taverna: A tool for the composition and enactment of bioinformatics workflows

by Tom Oinn, Matthew Addis, Justin Ferris, Darren Marvin, Tim Carver, Matthew R. Pocock, Anil Wipat - Bioinformatics , 2004
"... *To whom correspondence should be addressed. Running head: Composing and enacting workflows using Taverna Motivation: In silico experiments in bioinformatics involve the co-ordinated use of computational tools and information repositories. A growing number of these resources are being made available ..."
Abstract - Cited by 465 (8 self) - Add to MetaCart
examples are used to illustrate the ease by with which in silico experiments can be represented as Scufl workflows using the workbench application. Availability: The Taverna workflow system is available as open source and can be downloaded with example Scufl workflows from

The FASEB Journal • Life Sciences Forum Comparison of SCImago journal rank indicator with journal impact factor

by Matthew E. Falagas, Vasilios D. Kouranos, Ricardo Arencibia-jorge, Drosos E. Karageorgopoulos
"... ABSTRACT The application of currently available sophisticated algorithms of citation analysis allows for the incorporation of the “quality ” of citations in the evaluation of scientific journals. We sought to compare the newly introduced SCImago journal rank (SJR) indicator with the journal impact f ..."
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factor (IF). We retrieved relevant information from the official Web sites hosting the above indices and their source databases. The SJR indicator is an open-access re-source, while the journal IF requires paid subscrip-tion. The SJR indicator (based on Scopus data) lists considerably more journal titles

Semantic Wikipedia

by Max Völkel, Markus Krötzsch, Denny Vrandecic, Heiko Haller, Rudi Studer , 2006
"... Wikipedia is the world’s largest collaboratively edited source of encyclopaedic knowledge. But its contents are barely machineinterpretable. Structural knowledge, e. g. about how concepts are interrelated, can neither be formally stated nor automatically processed. Also the wealth of numerical data ..."
Abstract - Cited by 263 (19 self) - Add to MetaCart
to participate in the creation of an open semantic knowledge base, Wikipedia has the chance to become a resource of semantic statements, hitherto unknown regarding size, scope, openness, and internationalisation. These semantic enhancements bring to Wikipedia benefits of today’s semantic technologies: more

Open Access

by unknown authors
"... Two-stage source tracking method using a multiple linear regression model in the expanded phase domain Jae-Mo Yang * and Hong-Goo Kang This article proposes an efficient two-channel time delay estimation method for tracking a moving speaker in noisy and re-verberant environment. Unlike conventional ..."
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Two-stage source tracking method using a multiple linear regression model in the expanded phase domain Jae-Mo Yang * and Hong-Goo Kang This article proposes an efficient two-channel time delay estimation method for tracking a moving speaker in noisy and re-verberant environment. Unlike conventional

Open Access

by unknown authors
"... Large-scale use of mosquito larval source management for malaria control in Africa: a cost analysis Eve Worrall 1 and Ulrike Fillinger 2,3* Background: At present, large-scale use of two malaria vector control methods, long-lasting insecticidal nets (LLINs) and indoor residual spraying (IRS) is bein ..."
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Large-scale use of mosquito larval source management for malaria control in Africa: a cost analysis Eve Worrall 1 and Ulrike Fillinger 2,3* Background: At present, large-scale use of two malaria vector control methods, long-lasting insecticidal nets (LLINs) and indoor residual spraying (IRS

OPEN ACCESS

by Dickens S. Omondi Aduda, Collins Ouma, Rosebella Onyango, Mathews Onyango, Jane Bertrand, Citation Omondi, Aduda Ds, Ouma C, Onyango R , 1371
"... Background Voluntary medical male circumcision (VMMC) service delivery is complex and resource-in-tensive. In Kenya’s context there is still paucity of information on resource use vis-à-vis out-puts as programs scale up. Knowledge of technical efficiency, productivity and potential sources of constr ..."
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Background Voluntary medical male circumcision (VMMC) service delivery is complex and resource-in-tensive. In Kenya’s context there is still paucity of information on resource use vis-à-vis out-puts as programs scale up. Knowledge of technical efficiency, productivity and potential sources

Open Access

by unknown authors
"... Human resources for health and burden of disease: an econometric approach Carla Castillo-Laborde Background: The effect of health workers on health has been proven to be important for various health outcomes (e.g. mortality, coverage of immunisation or skilled birth attendants). The study aim of thi ..."
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controlling for the effects of income, income distribution, percentage of rural population with access to improved water source, and health expenditure. Results: This study presents evidence of a statistically negative relationship between the density of health workers (especially physicians) and the DALYs

HTSstation: a web application and open-access libraries for high-throughput sequencing data analysis

by Fabrice P. A. David, Julien Delafontaine, Solenne Carat, Frederick J. Ross, Gregory Lefebvre, Yohan Jarosz, Lucas Sinclair, Daan Noordermeer - PLoS ONE , 2014
"... The HTSstation analysis portal is a suite of simple web forms coupled to modular analysis pipelines for various applications of High-Throughput Sequencing including ChIP-seq, RNA-seq, 4C-seq and re-sequencing. HTSstation offers biologists the possibility to rapidly investigate their HTS data using a ..."
Abstract - Cited by 3 (0 self) - Add to MetaCart
an intuitive web application with heuristically pre-defined parameters. A number of open-source software components have been implemented and can be used to build, configure and run HTS analysis pipelines reactively. Besides, our programming framework empowers developers with the possibility to design

Apex: Extending Android Permission Model and Enforcement with User-defined Runtime Constraints

by Mohammad Nauman, Sohail Khan, Xinwen Zhang
"... Android is the first mass-produced consumer-market open source mobile platform that allows developers to easily create applications and users to readily install them. However, giving users the ability to install third-party applications poses serious security concerns. While the existing security me ..."
Abstract - Cited by 154 (2 self) - Add to MetaCart
Android is the first mass-produced consumer-market open source mobile platform that allows developers to easily create applications and users to readily install them. However, giving users the ability to install third-party applications poses serious security concerns. While the existing security

RESEARCH ARTICLE Open Access

by unknown authors
"... Quantifying the demand f r1 ien ou ho it pate the upcoming demand for hospital care services, in cepted surgical patient characteristics that were readily van Oostveen et al. BMC Health Services Research (2015) 15:15 DOI 10.1186/s12913-014-0674-222700, 1100 DE Amsterdam, The Netherlandsqualitative a ..."
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and quantitative terms. Existing instruments to determine the demand for care rely on subjective and clinical observations by nurses, give available from hospital databases [4]. This demand was defined as the costs of (para)medical and nursing re-sources used by surgical patients during their hospital stay
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