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Molecular-Dynamics Simulations of Martensitic

by Transitions By Entel, P. Entel, R. Meyer, K. Kadau, Theoretische Tieftemperaturphysik
"... Structural phase transformations in the ferromagnetic FeNi alloys is discussed on the basis of first-principles and molecular-dynamics simulations. In the molecular-dynamics study effective potentials have been used which were derived by the Embedding Atom Method. The simulations reproduce fairly ..."
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Structural phase transformations in the ferromagnetic FeNi alloys is discussed on the basis of first-principles and molecular-dynamics simulations. In the molecular-dynamics study effective potentials have been used which were derived by the Embedding Atom Method. The simulations reproduce

Molecular Dynamics Simulations

by Islet Amyloid, Polypeptide Monomer, Islet Amyloid, Polypeptide Monomer, Yun Zhang, Yin Luo, Yonghua Deng, Yuguang Mu, Guanghong Wei
"... Lipid interaction and membrane perturbation of human islet amyloid polypeptide monomer and dimer by molecular dynamics simulations ..."
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Lipid interaction and membrane perturbation of human islet amyloid polypeptide monomer and dimer by molecular dynamics simulations

Molecular dynamics simulation of dipole interactions

by David. R. Gilson , 2000
"... Molecular dynamics simulation of dipole interactions. David.R.Gilson With thanks to my mother, Carol and my supervisor Dr. Thomas Stirner for their patience, encouragement and support Molecular dynamics simulation of dipole interactions. David.R.Gilson ..."
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Molecular dynamics simulation of dipole interactions. David.R.Gilson With thanks to my mother, Carol and my supervisor Dr. Thomas Stirner for their patience, encouragement and support Molecular dynamics simulation of dipole interactions. David.R.Gilson

MOLECULAR DYNAMICS SIMULATION By

by Lakshmikanth Ganti, A Portfolio , 2000
"... Molecular Dynamics Simulation is an extremely powerful technique which involves solving the many-body problem in contexts relevant to the study of matter at the atomic level. The method allows the prediction of the static and dynamic properties of substances directly from the underlying interactions ..."
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Molecular Dynamics Simulation is an extremely powerful technique which involves solving the many-body problem in contexts relevant to the study of matter at the atomic level. The method allows the prediction of the static and dynamic properties of substances directly from the underlying

Spectroscopy and Molecular-Dynamics Simulation

by Christian T. Farrar, K Jianpeng Ma, David J. Singel, Christopher J. Halkides
"... cesses, including gene expression and cytoskeletal remodel-ing [1, 2]. Oncogenic forms of p21 are common in many types of tumors, especially those of the lung, colon, thyroid, and pancreas [2]. A necessary part of the function of p21 is the rapid conversion ..."
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cesses, including gene expression and cytoskeletal remodel-ing [1, 2]. Oncogenic forms of p21 are common in many types of tumors, especially those of the lung, colon, thyroid, and pancreas [2]. A necessary part of the function of p21 is the rapid conversion

Molecular dynamics simulations of biomolecules,”

by Martin Karplus , J Andrew Mccammon - Nat Struct Biol, , 2002
"... It has been 25 years since the first molecular dynamics simulation of a macromolecule of biological interest was published 1 . The simulation concerned the bovine pancreatic trypsin inhibitor (BPTI), which has served as the 'hydrogen molecule' of protein dynamics because of its small size ..."
Abstract - Cited by 143 (3 self) - Add to MetaCart
It has been 25 years since the first molecular dynamics simulation of a macromolecule of biological interest was published 1 . The simulation concerned the bovine pancreatic trypsin inhibitor (BPTI), which has served as the 'hydrogen molecule' of protein dynamics because of its small

Accelerating Molecular Dynamics Simulations

by Timothy C. Germann, Arthur F. Voter
"... In contrast with the converging length scales of atomistic simulations and experimental nanoscience, large time scale discrepancies still remain, due to the time-scale limitations of molecular dynamics. We briefly review two recently devel-oped methods, derived from transition state theory, for acce ..."
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In contrast with the converging length scales of atomistic simulations and experimental nanoscience, large time scale discrepancies still remain, due to the time-scale limitations of molecular dynamics. We briefly review two recently devel-oped methods, derived from transition state theory

system for molecular dynamics simulations.

by Morimoto G, Ohno Y, Hasegawa A, Taiji M, Makoto Taiji, Itta Ohmura, Gentaro Morimoto, Yousuke Ohno, Aki Hasegawa, Makoto Taiji
"... One contribution of 13 to a Theme Issue ‘Multi-scale systems in fluids and soft matter: approaches, numerics and applications’. Subject Areas: computational chemistry, computational biology, computer modelling and simulation, e-science, electrical engineering Keywords: molecular dynamics simulation, ..."
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One contribution of 13 to a Theme Issue ‘Multi-scale systems in fluids and soft matter: approaches, numerics and applications’. Subject Areas: computational chemistry, computational biology, computer modelling and simulation, e-science, electrical engineering Keywords: molecular dynamics simulation

Molecular Dynamics Simulation of Microstructure and

by Aleksey Vishnyakov , Alexander V Neimark - Molecular Mobilities in Swollen Nafion Membranes,” J. Phys. Chem. B, , 2001
"... The microphase segregation in the Nafion (DuPont trademark) perfluorinated membrane at different water contents was studied using molecular dynamics simulations. As the degree of solvation increased, we observed the formation of water clusters containing up to ca. 100 water molecules. In contrast t ..."
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The microphase segregation in the Nafion (DuPont trademark) perfluorinated membrane at different water contents was studied using molecular dynamics simulations. As the degree of solvation increased, we observed the formation of water clusters containing up to ca. 100 water molecules. In contrast

Accelerating Molecular Dynamics Simulations with GPUs∗

by John Paul Walters, Vidyananth Balu, Vipin Chaudhary, David Kofke, Andrew Schultz
"... Molecular dynamics simulations are known to run for many days or weeks before completion. In this pa-per we explore the use of GPUs to accelerate a Lennard-Jones-based molecular dynamics simulation of up to 27000 atoms. We demonstrate speedups that exceed 100x on com-modity Nvidia GPUs and discuss t ..."
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Molecular dynamics simulations are known to run for many days or weeks before completion. In this pa-per we explore the use of GPUs to accelerate a Lennard-Jones-based molecular dynamics simulation of up to 27000 atoms. We demonstrate speedups that exceed 100x on com-modity Nvidia GPUs and discuss
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