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Maximum likelihood from incomplete data via the EM algorithm

by A. P. Dempster, N. M. Laird, D. B. Rubin - JOURNAL OF THE ROYAL STATISTICAL SOCIETY, SERIES B , 1977
"... A broadly applicable algorithm for computing maximum likelihood estimates from incomplete data is presented at various levels of generality. Theory showing the monotone behaviour of the likelihood and convergence of the algorithm is derived. Many examples are sketched, including missing value situat ..."
Abstract - Cited by 11972 (17 self) - Add to MetaCart
A broadly applicable algorithm for computing maximum likelihood estimates from incomplete data is presented at various levels of generality. Theory showing the monotone behaviour of the likelihood and convergence of the algorithm is derived. Many examples are sketched, including missing value

Paml 4: Phylogenetic analysis by maximum likelihood

by Ziheng Yang - Mol. Biol. Evol , 2007
"... PAML, currently in version 4, is a package of programs for phylogenetic analyses of DNA and protein sequences using maximum likelihood (ML). The programs may be used to compare and test phylogenetic trees, but their main strengths lie in the rich repertoire of evolutionary models implemented, which ..."
Abstract - Cited by 1201 (28 self) - Add to MetaCart
PAML, currently in version 4, is a package of programs for phylogenetic analyses of DNA and protein sequences using maximum likelihood (ML). The programs may be used to compare and test phylogenetic trees, but their main strengths lie in the rich repertoire of evolutionary models implemented, which

Maximum entropy markov models for information extraction and segmentation

by Andrew McCallum, Dayne Freitag, Fernando Pereira , 2000
"... Hidden Markov models (HMMs) are a powerful probabilistic tool for modeling sequential data, and have been applied with success to many text-related tasks, such as part-of-speech tagging, text segmentation and information extraction. In these cases, the observations are usually modeled as multinomial ..."
Abstract - Cited by 561 (18 self) - Add to MetaCart
Hidden Markov models (HMMs) are a powerful probabilistic tool for modeling sequential data, and have been applied with success to many text-related tasks, such as part-of-speech tagging, text segmentation and information extraction. In these cases, the observations are usually modeled

A new approach to the maximum flow problem

by Andrew V. Goldberg, Robert E. Tarjan - JOURNAL OF THE ACM , 1988
"... All previously known efficient maximum-flow algorithms work by finding augmenting paths, either one path at a time (as in the original Ford and Fulkerson algorithm) or all shortest-length augmenting paths at once (using the layered network approach of Dinic). An alternative method based on the pre ..."
Abstract - Cited by 672 (33 self) - Add to MetaCart
All previously known efficient maximum-flow algorithms work by finding augmenting paths, either one path at a time (as in the original Ford and Fulkerson algorithm) or all shortest-length augmenting paths at once (using the layered network approach of Dinic). An alternative method based

A Simple, Fast, and Accurate Algorithm to Estimate Large Phylogenies by Maximum Likelihood

by Stéphane Guindon, Olivier Gascuel , 2003
"... The increase in the number of large data sets and the complexity of current probabilistic sequence evolution models necessitates fast and reliable phylogeny reconstruction methods. We describe a new approach, based on the maximumlikelihood principle, which clearly satisfies these requirements. The ..."
Abstract - Cited by 2182 (27 self) - Add to MetaCart
of distance-based and parsimony approaches. The reduction of computing time is dramatic in comparison with other maximum-likelihood packages, while the likelihood maximization ability tends to be higher. For example, only 12 min were required on a standard personal computer to analyze a data set consisting

MEGA5: Molecular evolutionary genetics analysis using maximum . . .

by Koichiro Tamura, Daniel Peterson, Nicholas Peterson, Glen Stecher, Masatoshi Nei, Sudhir Kumar , 2011
"... Comparative analysis of molecular sequence data is essential for reconstructing the evolutionary histories of species and inferring the nature and extent of selective forces shaping the evolution of genes and species. Here, we announce the release of Molecular Evolutionary Genetics Analysis version ..."
Abstract - Cited by 7284 (25 self) - Add to MetaCart
Comparative analysis of molecular sequence data is essential for reconstructing the evolutionary histories of species and inferring the nature and extent of selective forces shaping the evolution of genes and species. Here, we announce the release of Molecular Evolutionary Genetics Analysis version

Maximum Likelihood Linear Transformations for HMM-Based Speech Recognition

by M.J.F. Gales - COMPUTER SPEECH AND LANGUAGE , 1998
"... This paper examines the application of linear transformations for speaker and environmental adaptation in an HMM-based speech recognition system. In particular, transformations that are trained in a maximum likelihood sense on adaptation data are investigated. Other than in the form of a simple bias ..."
Abstract - Cited by 570 (68 self) - Add to MetaCart
This paper examines the application of linear transformations for speaker and environmental adaptation in an HMM-based speech recognition system. In particular, transformations that are trained in a maximum likelihood sense on adaptation data are investigated. Other than in the form of a simple

Using Maimonides’ Rule to Estimate the Effect of Class Size on Scholastic Achievement

by Joshua D. Angrist, Victor Lavy - QUARTERLY JOURNAL OF ECONOMICS , 1999
"... The twelfth century rabbinic scholar Maimonides proposed a maximum class size of 40. This same maximum induces a nonlinear and nonmonotonic relation-ship between grade enrollment and class size in Israeli public schools today. Maimonides’ rule of 40 is used here to construct instrumental variables e ..."
Abstract - Cited by 582 (40 self) - Add to MetaCart
The twelfth century rabbinic scholar Maimonides proposed a maximum class size of 40. This same maximum induces a nonlinear and nonmonotonic relation-ship between grade enrollment and class size in Israeli public schools today. Maimonides’ rule of 40 is used here to construct instrumental variables

Maximum Likelihood Phylogenetic Estimation from DNA Sequences with Variable Rates over Sites: Approximate Methods

by Ziheng Yang - J. Mol. Evol , 1994
"... Two approximate methods are proposed for maximum likelihood phylogenetic estimation, which allow variable rates of substitution across nucleotide sites. Three data sets with quite different characteristics were analyzed to examine empirically the performance of these methods. The first, called ..."
Abstract - Cited by 557 (29 self) - Add to MetaCart
Two approximate methods are proposed for maximum likelihood phylogenetic estimation, which allow variable rates of substitution across nucleotide sites. Three data sets with quite different characteristics were analyzed to examine empirically the performance of these methods. The first, called

A maximum likelihood approach to continuous speech recognition

by Lalit R. Bahl, Frederick Jelinek, Robert, L. Mercer - IEEE Trans. Pattern Anal. Machine Intell , 1983
"... Abstract-Speech recognition is formulated as a problem of maximum likelihood decoding. This formulation requires statistical models of the speech production process. In this paper, we describe a number of sta-tistical models for use in speech recognition. We give special attention to determining the ..."
Abstract - Cited by 477 (9 self) - Add to MetaCart
Abstract-Speech recognition is formulated as a problem of maximum likelihood decoding. This formulation requires statistical models of the speech production process. In this paper, we describe a number of sta-tistical models for use in speech recognition. We give special attention to determining
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