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Limma: linear models for microarray data
 Bioinformatics and Computational Biology Solutions using R and Bioconductor
, 2005
"... This free opensource software implements academic research by the authors and coworkers. If you use it, please support the project by citing the appropriate journal articles listed in Section 2.1.Contents ..."
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Cited by 774 (13 self)
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This free opensource software implements academic research by the authors and coworkers. If you use it, please support the project by citing the appropriate journal articles listed in Section 2.1.Contents
Longitudinal data analysis using generalized linear models”.
 Biometrika,
, 1986
"... SUMMARY This paper proposes an extension of generalized linear models to the analysis of longitudinal data. We introduce a class of estimating equations that give consistent estimates of the regression parameters and of their variance under mild assumptions about the time dependence. The estimating ..."
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Cited by 1526 (8 self)
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SUMMARY This paper proposes an extension of generalized linear models to the analysis of longitudinal data. We introduce a class of estimating equations that give consistent estimates of the regression parameters and of their variance under mild assumptions about the time dependence
Regularization paths for generalized linear models via coordinate descent
, 2009
"... We develop fast algorithms for estimation of generalized linear models with convex penalties. The models include linear regression, twoclass logistic regression, and multinomial regression problems while the penalties include ℓ1 (the lasso), ℓ2 (ridge regression) and mixtures of the two (the elastic ..."
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Cited by 724 (15 self)
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We develop fast algorithms for estimation of generalized linear models with convex penalties. The models include linear regression, twoclass logistic regression, and multinomial regression problems while the penalties include ℓ1 (the lasso), ℓ2 (ridge regression) and mixtures of the two (the
Linear models and empirical bayes methods for assessing differential expression in microarray experiments.
 Stat. Appl. Genet. Mol. Biol.
, 2004
"... Abstract The problem of identifying differentially expressed genes in designed microarray experiments is considered. Lonnstedt and Speed (2002) derived an expression for the posterior odds of differential expression in a replicated twocolor experiment using a simple hierarchical parametric model. ..."
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Cited by 1321 (24 self)
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. The purpose of this paper is to develop the hierarchical model of Lonnstedt and Speed (2002) into a practical approach for general microarray experiments with arbitrary numbers of treatments and RNA samples. The model is reset in the context of general linear models with arbitrary coefficients and contrasts
The robust beauty of improper linear models in decision making
 American Psychologist
, 1979
"... ABSTRACT: Proper linear models are those in which predictor variables are given weights in such a way that the resulting linear composite optimally predicts some criterion of interest; examples of proper linear models are standard regression analysis, discriminant function analysis, and ridge regres ..."
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Cited by 267 (1 self)
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ABSTRACT: Proper linear models are those in which predictor variables are given weights in such a way that the resulting linear composite optimally predicts some criterion of interest; examples of proper linear models are standard regression analysis, discriminant function analysis, and ridge
An analysis of transformations
 Journal of the Royal Statistical Society. Series B (Methodological
, 1964
"... In the analysis of data it is often assumed that observations y,, y,,...,y, are independently normally distributed with constant variance and with expectations specified by a model linear in a set of parameters 0. In this paper we make the less restrictive assumption that such a normal, homoscedasti ..."
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Cited by 1067 (3 self)
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In the analysis of data it is often assumed that observations y,, y,,...,y, are independently normally distributed with constant variance and with expectations specified by a model linear in a set of parameters 0. In this paper we make the less restrictive assumption that such a normal
Maximum Likelihood Linear Transformations for HMMBased Speech Recognition
 COMPUTER SPEECH AND LANGUAGE
, 1998
"... This paper examines the application of linear transformations for speaker and environmental adaptation in an HMMbased speech recognition system. In particular, transformations that are trained in a maximum likelihood sense on adaptation data are investigated. Other than in the form of a simple bias ..."
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Cited by 570 (68 self)
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bias, strict linear featurespace transformations are inappropriate in this case. Hence, only modelbased linear transforms are considered. The paper compares the two possible forms of modelbased transforms: (i) unconstrained, where any combination of mean and variance transform may be used, and (ii
Automatic Discovery of Linear Restraints Among Variables of a Program
, 1978
"... The model of abstract interpretation of programs developed by Cousot and Cousot [2nd ISOP, 1976], Cousot and Cousot [POPL 1977] and Cousot [PhD thesis 1978] is applied to the static determination of linear equality or inequality invariant relations among numerical variables of programs. ..."
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Cited by 726 (43 self)
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The model of abstract interpretation of programs developed by Cousot and Cousot [2nd ISOP, 1976], Cousot and Cousot [POPL 1977] and Cousot [PhD thesis 1978] is applied to the static determination of linear equality or inequality invariant relations among numerical variables of programs.
Maximum likelihood linear regression for speaker adaptation of continuous density hidden Markov models
, 1995
"... ..."
Eigenfaces vs. Fisherfaces: Recognition Using Class Specific Linear Projection
, 1997
"... We develop a face recognition algorithm which is insensitive to gross variation in lighting direction and facial expression. Taking a pattern classification approach, we consider each pixel in an image as a coordinate in a highdimensional space. We take advantage of the observation that the images ..."
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Cited by 2310 (17 self)
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from this linear subspace. Rather than explicitly modeling this deviation, we linearly project the image into a subspace in a manner which discounts those regions of the face with large deviation. Our projection method is based on Fisher's Linear Discriminant and produces well separated classes
Results 1  10
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