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Limma: linear models for microarray data
 Bioinformatics and Computational Biology Solutions using R and Bioconductor
, 2005
"... This free opensource software implements academic research by the authors and coworkers. If you use it, please support the project by citing the appropriate journal articles listed in Section 2.1.Contents ..."
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Cited by 759 (13 self)
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This free opensource software implements academic research by the authors and coworkers. If you use it, please support the project by citing the appropriate journal articles listed in Section 2.1.Contents
Improvements of the GEL Robust Tests for Linear IV Models and Applications
, 2007
"... In order to improve the small sample performance of the Generalized Empirical Likelihood Kleibergen type tests (GELK), we propose to reweigh the variance of moments matrix with GEL probabilities. Our modi…cation improves GELK signi…cantly by cutting the size distortion in half. Using simulations, we ..."
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In order to improve the small sample performance of the Generalized Empirical Likelihood Kleibergen type tests (GELK), we propose to reweigh the variance of moments matrix with GEL probabilities. Our modi…cation improves GELK signi…cantly by cutting the size distortion in half. Using simulations, we compare the performance of our modi…ed tests with Kleibergen (2002) and the original GELK tests in a dynamic panel setting. As an empirical application, we use the Arellano and Bond (1991) dynamic panel data to estimate labor demand. We compare our results with the traditional Wald test to illustrate the practical importance of using tests which are robust to weak instruments in a dynamic panel setting. 1
A Survey of Weak Instruments and Weak Identification in Generalized Method of Moments
 Journal of Business & Economic Statistics
, 2002
"... Weak instruments arise when the instruments in linear instrumental variables (IV) regression are weakly correlated with the included endogenous variables. In generalized method of moments (GMM), more generally, weak instruments correspond to weak identification of some or all of the unknown paramete ..."
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Cited by 451 (8 self)
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parameters. Weak identification leads to GMM statistics with nonnormal distributions, even in large samples, so that conventional IV or GMM inferences are misleading. Fortunately, various procedures are now available for detecting and handling weak instruments in the linear IV model and, to a lesser degree
An Extended Set of Fortran Basic Linear Algebra Subprograms
 ACM TRANSACTIONS ON MATHEMATICAL SOFTWARE
, 1986
"... This paper describes an extension to the set of Basic Linear Algebra Subprograms. The extensions are targeted at matrixvector operations which should provide for efficient and portable implementations of algorithms for high performance computers. ..."
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Cited by 526 (72 self)
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This paper describes an extension to the set of Basic Linear Algebra Subprograms. The extensions are targeted at matrixvector operations which should provide for efficient and portable implementations of algorithms for high performance computers.
Lambertian Reflectance and Linear Subspaces
, 2000
"... We prove that the set of all reflectance functions (the mapping from surface normals to intensities) produced by Lambertian objects under distant, isotropic lighting lies close to a 9D linear subspace. This implies that, in general, the set of images of a convex Lambertian object obtained under a wi ..."
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Cited by 514 (20 self)
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We prove that the set of all reflectance functions (the mapping from surface normals to intensities) produced by Lambertian objects under distant, isotropic lighting lies close to a 9D linear subspace. This implies that, in general, the set of images of a convex Lambertian object obtained under a
Linear pattern matching algorithms
 IN PROCEEDINGS OF THE 14TH ANNUAL IEEE SYMPOSIUM ON SWITCHING AND AUTOMATA THEORY. IEEE
, 1972
"... In 1970, Knuth, Pratt, and Morris [1] showed how to do basic pattern matching in linear time. Related problems, such as those discussed in [4], have previously been solved by efficient but suboptimal algorithms. In this paper, we introduce an interesting data structure called a bitree. A linear ti ..."
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Cited by 549 (0 self)
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In 1970, Knuth, Pratt, and Morris [1] showed how to do basic pattern matching in linear time. Related problems, such as those discussed in [4], have previously been solved by efficient but suboptimal algorithms. In this paper, we introduce an interesting data structure called a bitree. A linear
Regularization paths for generalized linear models via coordinate descent
, 2009
"... We develop fast algorithms for estimation of generalized linear models with convex penalties. The models include linear regression, twoclass logistic regression, and multinomial regression problems while the penalties include ℓ1 (the lasso), ℓ2 (ridge regression) and mixtures of the two (the elastic ..."
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Cited by 698 (14 self)
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We develop fast algorithms for estimation of generalized linear models with convex penalties. The models include linear regression, twoclass logistic regression, and multinomial regression problems while the penalties include ℓ1 (the lasso), ℓ2 (ridge regression) and mixtures of the two (the
Linear models and empirical Bayes methods for assessing differential expression in microarray experiments
 STAT. APPL. GENET. MOL. BIOL
, 2004
"... ..."
Using Linear Algebra for Intelligent Information Retrieval
 SIAM REVIEW
, 1995
"... Currently, most approaches to retrieving textual materials from scientific databases depend on a lexical match between words in users' requests and those in or assigned to documents in a database. Because of the tremendous diversity in the words people use to describe the same document, lexical ..."
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Cited by 672 (18 self)
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Currently, most approaches to retrieving textual materials from scientific databases depend on a lexical match between words in users' requests and those in or assigned to documents in a database. Because of the tremendous diversity in the words people use to describe the same document, lexical methods are necessarily incomplete and imprecise. Using the singular value decomposition (SVD), one can take advantage of the implicit higherorder structure in the association of terms with documents by determining the SVD of large sparse term by document matrices. Terms and documents represented by 200300 of the largest singular vectors are then matched against user queries. We call this retrieval method Latent Semantic Indexing (LSI) because the subspace represents important associative relationships between terms and documents that are not evident in individual documents. LSI is a completely automatic yet intelligent indexing method, widely applicable, and a promising way to improve users...
Automatic Discovery of Linear Restraints Among Variables of a Program
, 1978
"... The model of abstract interpretation of programs developed by Cousot and Cousot [2nd ISOP, 1976], Cousot and Cousot [POPL 1977] and Cousot [PhD thesis 1978] is applied to the static determination of linear equality or inequality invariant relations among numerical variables of programs. ..."
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Cited by 733 (47 self)
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The model of abstract interpretation of programs developed by Cousot and Cousot [2nd ISOP, 1976], Cousot and Cousot [POPL 1977] and Cousot [PhD thesis 1978] is applied to the static determination of linear equality or inequality invariant relations among numerical variables of programs.
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