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Index-driven similarity search in metric spaces

by Gisli R. Hjaltason, Hanan Samet - ACM Transactions on Database Systems , 2003
"... Similarity search is a very important operation in multimedia databases and other database applications involving complex objects, and involves finding objects in a data set S similar to a query object q, based on some similarity measure. In this article, we focus on methods for similarity search th ..."
Abstract - Cited by 192 (8 self) - Add to MetaCart
that make the general assumption that similarity is represented with a distance metric d. Existing methods for handling similarity search in this setting typically fall into one of two classes. The first directly indexes the objects based on distances (distance-based indexing), while the second is based

Efficient similarity search in sequence databases

by Rakesh Agrawal, Christos Faloutsos, Arun Swami , 1994
"... We propose an indexing method for time sequences for processing similarity queries. We use the Discrete Fourier Transform (DFT) to map time sequences to the frequency domain, the crucial observation being that, for most sequences of practical interest, only the first few frequencies are strong. Anot ..."
Abstract - Cited by 515 (19 self) - Add to MetaCart
We propose an indexing method for time sequences for processing similarity queries. We use the Discrete Fourier Transform (DFT) to map time sequences to the frequency domain, the crucial observation being that, for most sequences of practical interest, only the first few frequencies are strong

Similarity search in high dimensions via hashing

by Aristides Gionis, Piotr Indyk, Rajeev Motwani , 1999
"... The nearest- or near-neighbor query problems arise in a large variety of database applications, usually in the context of similarity searching. Of late, there has been increasing interest in building search/index structures for performing similarity search over high-dimensional data, e.g., image dat ..."
Abstract - Cited by 641 (10 self) - Add to MetaCart
The nearest- or near-neighbor query problems arise in a large variety of database applications, usually in the context of similarity searching. Of late, there has been increasing interest in building search/index structures for performing similarity search over high-dimensional data, e.g., image

M-tree: An Efficient Access Method for Similarity Search in Metric Spaces

by Paolo Ciaccia, Marco Patella, Pavel Zezula , 1997
"... A new access meth d, called M-tree, is proposed to organize and search large data sets from a generic "metric space", i.e. whE4 object proximity is only defined by a distance function satisfyingth positivity, symmetry, and triangle inequality postulates. We detail algorith[ for insertion o ..."
Abstract - Cited by 663 (38 self) - Add to MetaCart
A new access meth d, called M-tree, is proposed to organize and search large data sets from a generic "metric space", i.e. whE4 object proximity is only defined by a distance function satisfyingth positivity, symmetry, and triangle inequality postulates. We detail algorith[ for insertion

Gapped BLAST and PSI-BLAST: a new generation of protein database search programs.

by Stephen F Altschul , Thomas L Madden , Alejandro A Schäffer , Jinghui Zhang , Zheng Zhang , Webb Miller , David J Lipman - Nucleic Acids Res. , 1997
"... ABSTRACT The BLAST programs are widely used tools for searching protein and DNA databases for sequence similarities. For protein comparisons, a variety of definitional, algorithmic and statistical refinements described here permits the execution time of the BLAST programs to be decreased substantia ..."
Abstract - Cited by 8572 (88 self) - Add to MetaCart
ABSTRACT The BLAST programs are widely used tools for searching protein and DNA databases for sequence similarities. For protein comparisons, a variety of definitional, algorithmic and statistical refinements described here permits the execution time of the BLAST programs to be decreased

VisualSEEk: a fully automated content-based image query system

by John R. Smith, Shih-fu Chang , 1996
"... We describe a highly functional prototype system for searching by visual features in an image database. The VisualSEEk system is novel in that the user forms the queries by diagramming spatial arrangements of color regions. The system finds the images that contain the most similar arrangements of ..."
Abstract - Cited by 762 (31 self) - Add to MetaCart
We describe a highly functional prototype system for searching by visual features in an image database. The VisualSEEk system is novel in that the user forms the queries by diagramming spatial arrangements of color regions. The system finds the images that contain the most similar arrangements

An approach to correlate tandem mass spectral data of peptides with amino acid sequences in a protein database

by Jimmy K. Eng, Ashley L. Mccormack, John R. Yates - J. Am. Soc. Mass Spectrom , 1994
"... A method to correlate the uninterpreted tandem mass spectra of peptides produced under low energy (lo-50 eV) collision conditions with amino acid sequences in the Genpept database has been developed. In this method the protein database is searched to identify linear amino acid sequences within a mas ..."
Abstract - Cited by 944 (19 self) - Add to MetaCart
A method to correlate the uninterpreted tandem mass spectra of peptides produced under low energy (lo-50 eV) collision conditions with amino acid sequences in the Genpept database has been developed. In this method the protein database is searched to identify linear amino acid sequences within a

Internet Advertising and the Generalized Second Price Auction: Selling Billions of Dollars Worth of Keywords

by Benjamin Edelman, Michael Ostrovsky, Michael Schwarz - AMERICAN ECONOMIC REVIEW , 2007
"... We investigate the “generalized second-price” (GSP) auction, a new mechanism used by search engines to sell online advertising. Although GSP looks similar to the Vickrey-Clarke-Groves (VCG) mechanism, its properties are very different. Unlike the VCG mechanism, GSP generally does not have an equilib ..."
Abstract - Cited by 555 (18 self) - Add to MetaCart
We investigate the “generalized second-price” (GSP) auction, a new mechanism used by search engines to sell online advertising. Although GSP looks similar to the Vickrey-Clarke-Groves (VCG) mechanism, its properties are very different. Unlike the VCG mechanism, GSP generally does not have

Learning the Kernel Matrix with Semi-Definite Programming

by Gert R. G. Lanckriet, Nello Cristianini, Laurent El Ghaoui, Peter Bartlett, Michael I. Jordan , 2002
"... Kernel-based learning algorithms work by embedding the data into a Euclidean space, and then searching for linear relations among the embedded data points. The embedding is performed implicitly, by specifying the inner products between each pair of points in the embedding space. This information ..."
Abstract - Cited by 775 (21 self) - Add to MetaCart
Kernel-based learning algorithms work by embedding the data into a Euclidean space, and then searching for linear relations among the embedded data points. The embedding is performed implicitly, by specifying the inner products between each pair of points in the embedding space. This information

Similarity estimation techniques from rounding algorithms

by Moses S. Charikar - In Proc. of 34th STOC , 2002
"... A locality sensitive hashing scheme is a distribution on a family F of hash functions operating on a collection of objects, such that for two objects x, y, Prh∈F[h(x) = h(y)] = sim(x,y), where sim(x,y) ∈ [0, 1] is some similarity function defined on the collection of objects. Such a scheme leads ..."
Abstract - Cited by 449 (6 self) - Add to MetaCart
to a compact representation of objects so that similarity of objects can be estimated from their compact sketches, and also leads to efficient algorithms for approximate nearest neighbor search and clustering. Min-wise independent permutations provide an elegant construction of such a locality
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