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Scalable molecular dynamics with NAMD.

by James C Phillips , Rosemary Braun , Wei Wang , James Gumbart , Emad Tajkhorshid , Elizabeth Villa , Christophe Chipot , Robert D Skeel , Laxmikant Kalé , Klaus Schulten - J Comput Chem , 2005
"... Abstract: NAMD is a parallel molecular dynamics code designed for high-performance simulation of large biomolecular systems. NAMD scales to hundreds of processors on high-end parallel platforms, as well as tens of processors on low-cost commodity clusters, and also runs on individual desktop and la ..."
Abstract - Cited by 849 (63 self) - Add to MetaCart
Abstract: NAMD is a parallel molecular dynamics code designed for high-performance simulation of large biomolecular systems. NAMD scales to hundreds of processors on high-end parallel platforms, as well as tens of processors on low-cost commodity clusters, and also runs on individual desktop

Completely Derandomized Self-Adaptation in Evolution Strategies

by Nikolaus Hansen, Andreas Ostermeier - Evolutionary Computation , 2001
"... This paper puts forward two useful methods for self-adaptation of the mutation distribution -- the concepts of derandomization and cumulation. Principle shortcomings of the concept of mutative strategy parameter control and two levels of derandomization are reviewed. Basic demands on the self-adapta ..."
Abstract - Cited by 549 (58 self) - Add to MetaCart
This paper puts forward two useful methods for self-adaptation of the mutation distribution -- the concepts of derandomization and cumulation. Principle shortcomings of the concept of mutative strategy parameter control and two levels of derandomization are reviewed. Basic demands on the self

Token flow control

by Amit Kumar, et al.
"... As companies move towards many-core chips, an efficient onchip communication fabric to connect these cores assumes critical importance. To address limitations to wire delay scalability and increasing bandwidth demands, state-of-the-art on-chip networks use a modular packet-switched design with route ..."
Abstract - Cited by 635 (35 self) - Add to MetaCart
/delay. In this work, we propose token flow control (TFC), a flow control mechanism in which nodes in the network send out tokens in their local neighborhood to communicate information about their available resources. These tokens are then used in both routing and flow control: to choose less congested paths

GOLOG: A Logic Programming Language for Dynamic Domains

by Hector J. Levesque, Raymond Reiter, Yves Lespérance, Fangzhen Lin, Richard B. Scherl , 1994
"... This paper proposes a new logic programming language called GOLOG whose interpreter automatically maintains an explicit representation of the dynamic world being modeled, on the basis of user supplied axioms about the preconditions and effects of actions and the initial state of the world. This allo ..."
Abstract - Cited by 628 (74 self) - Add to MetaCart
This paper proposes a new logic programming language called GOLOG whose interpreter automatically maintains an explicit representation of the dynamic world being modeled, on the basis of user supplied axioms about the preconditions and effects of actions and the initial state of the world

Information flow and cooperative control of vehicle formations.

by J Alexander Fax , Richard M Murray - In Proceeings of 15th IFAC Conference, , 2002
"... Abstract We consider the problem of cooperation among a collection of vehicles performing a shared task using intervehicle communication to coordinate their actions. We apply tools from graph theory to relate the topology of the communication network to formation stability. We prove a Nyquist crite ..."
Abstract - Cited by 551 (11 self) - Add to MetaCart
criterion that uses the eigenvalues of the graph Laplacian matrix to determine the effect of the graph on formation stability. We also propose a method for decentralized information exchange between vehicles. This approach realizes a dynamical system that supplies each vehicle with a common reference

Jflow: Practical mostly-static information flow control.

by Andrew C Myers - In Proceedings of the 26th ACM SIGPLAN-SIGACT symposium on Principles of programming languages, , 1999
"... Abstract A promising technique for protecting privacy and integrity of sensitive data is to statically check information flow within programs that manipulate the data. While previous work has proposed programming language extensions to allow this static checking, the resulting languages are too res ..."
Abstract - Cited by 584 (33 self) - Add to MetaCart
in previous models: a decentralized label model, label polymorphism, run-time label checking, and automatic label inference. JFlow also supports many language features that have never been integrated successfully with static information flow control, including objects, subclassing, dynamic type tests, access

The dynamic behavior of a data dissemination protocol for network programming at scale

by Jonathan W. Hui, David Culler - In Proceedings of the Second International Conferences on Embedded Network Sensor Systems (SenSys
"... To support network programming, we present Deluge, a reliable data dissemination protocol for propagating large data objects from one or more source nodes to many other nodes over a multihop, wireless sensor network. Deluge builds from prior work in density-aware, epidemic maintenance protocols. Usi ..."
Abstract - Cited by 492 (24 self) - Add to MetaCart
. Using both a real-world deployment and simulation, we show that Deluge can reliably disseminate data to all nodes and characterize its overall performance. On Mica2dot nodes, Deluge can push nearly 90 bytes/second, oneninth the maximum transmission rate of the radio supported under TinyOS. Control

Adaptive clustering for mobile wireless networks

by Chunhung Richard Lin, Mario Gerla - IEEE Journal on Selected Areas in Communications , 1997
"... This paper describes a self-organizing, multihop, mobile radio network, which relies on a code division access scheme for multimedia support. In the proposed network architecture, nodes are organized into nonoverlapping clusters. The clusters are independently controlled and are dynamically reconfig ..."
Abstract - Cited by 561 (11 self) - Add to MetaCart
This paper describes a self-organizing, multihop, mobile radio network, which relies on a code division access scheme for multimedia support. In the proposed network architecture, nodes are organized into nonoverlapping clusters. The clusters are independently controlled and are dynamically

Option pricing when underlying stock returns are discontinuous

by Robert C. Merton - Journal of Financial Economics , 1976
"... The validity of the classic Black-Scholes option pricing formula dcpcnds on the capability of investors to follow a dynamic portfolio strategy in the stock that replicates the payoff structure to the option. The critical assumption required for such a strategy to be feasible, is that the underlying ..."
Abstract - Cited by 1001 (3 self) - Add to MetaCart
The validity of the classic Black-Scholes option pricing formula dcpcnds on the capability of investors to follow a dynamic portfolio strategy in the stock that replicates the payoff structure to the option. The critical assumption required for such a strategy to be feasible, is that the underlying

Implications of rational inattention

by Christopher A. Sims - JOURNAL OF MONETARY ECONOMICS , 2002
"... A constraint that actions can depend on observations only through a communication channel with finite Shannon capacity is shown to be able to play a role very similar to that of a signal extraction problem or an adjustment cost in standard control problems. The resulting theory looks enough like fa ..."
Abstract - Cited by 525 (11 self) - Add to MetaCart
A constraint that actions can depend on observations only through a communication channel with finite Shannon capacity is shown to be able to play a role very similar to that of a signal extraction problem or an adjustment cost in standard control problems. The resulting theory looks enough like
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