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Dictionary of protein secondary structure: pattern recognition of hydrogenbonded and geometrical features
, 1983
"... For a successful analysis of the relation between amino acid sequence and protein structure, an unambiguous and physically meaningful definition of secondary structure is essential. We have developed a set of simple and physically motivated criteria for secondary structure, programmed as a patternr ..."
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Cited by 2066 (4 self)
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recognition process of hydrogenbonded and geometrical features extracted from xray coordinates. Cooperative secondary structure is recognized as repeats of the elementary hydrogenbonding patterns “turn ” and “bridge. ” Repeating turns are “helices, ” repeating bridges are “ladders, ” connected ladders are “sheets
Voronoi diagrams  a survey of a fundamental geometric data structure
 ACM COMPUTING SURVEYS
, 1991
"... This paper presents a survey of the Voronoi diagram, one of the most fundamental data structures in computational geometry. It demonstrates the importance and usefulness of the Voronoi diagram in a wide variety of fields inside and outside computer science and surveys the history of its development. ..."
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Cited by 735 (5 self)
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This paper presents a survey of the Voronoi diagram, one of the most fundamental data structures in computational geometry. It demonstrates the importance and usefulness of the Voronoi diagram in a wide variety of fields inside and outside computer science and surveys the history of its development
SCOP, Structural Classification of Proteins Database: Applications to Evaluation of the Effectiveness of Sequence Alignment Methods and Statistics of Protein Structural Data
, 1998
"... The Structural Classification of Proteins (SCOP) database provides a detailed and comprehensive description of the relationships of all known protein structures. The classification is on hierarchical levels: the first two levels, family and superfamily, describe near and far evolutionary relationshi ..."
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Cited by 1529 (24 self)
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The Structural Classification of Proteins (SCOP) database provides a detailed and comprehensive description of the relationships of all known protein structures. The classification is on hierarchical levels: the first two levels, family and superfamily, describe near and far evolutionary
DavenportSchinzel Sequences and Their Geometric Applications
, 1998
"... An (n; s) DavenportSchinzel sequence, for positive integers n and s, is a sequence composed of n distinct symbols with the properties that no two adjacent elements are equal, and that it does not contain, as a (possibly noncontiguous) subsequence, any alternation a \Delta \Delta \Delta b \Delta \ ..."
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Cited by 437 (105 self)
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of geometric problems can be formulated in terms of lower envelopes. A nearlinear bound on the maximum length of DavenportSchinzel sequences enable us to derive sharp bounds on the combinatorial structure underlying various geometric problems, which in turn yields efficient algorithms for these problems.
Primitives for the manipulation of general subdivisions and the computations of Voronoi diagrams
 ACM Tmns. Graph
, 1985
"... The following problem is discussed: Given n points in the plane (the sites) and an arbitrary query point 4, find the site that is closest to q. This problem can be solved by constructing the Voronoi diagram of the given sites and then locating the query point in one of its regions. Two algorithms ar ..."
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Cited by 532 (11 self)
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to the separation of the geometrical and topological aspects of the problem and to the use of two simple but powerful primitives, a geometric predicate and an operator for manipulating the topology of the diagram. The topology is represented by a new data structure for generalized diagrams, that is, embeddings
The geometry of algorithms with orthogonality constraints
 SIAM J. MATRIX ANAL. APPL
, 1998
"... In this paper we develop new Newton and conjugate gradient algorithms on the Grassmann and Stiefel manifolds. These manifolds represent the constraints that arise in such areas as the symmetric eigenvalue problem, nonlinear eigenvalue problems, electronic structures computations, and signal proces ..."
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Cited by 633 (1 self)
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In this paper we develop new Newton and conjugate gradient algorithms on the Grassmann and Stiefel manifolds. These manifolds represent the constraints that arise in such areas as the symmetric eigenvalue problem, nonlinear eigenvalue problems, electronic structures computations, and signal
Distortion invariant object recognition in the dynamic link architecture
 IEEE TRANSACTIONS ON COMPUTERS
, 1993
"... We present an object recognition system based on the Dynamic Link Architecture, which is an extension to classical Artificial Neural Networks. The Dynamic Link Architecture exploits correlations in the finescale temporal structure of cellular signals in order to group neurons dynamically into hig ..."
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Cited by 632 (80 self)
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We present an object recognition system based on the Dynamic Link Architecture, which is an extension to classical Artificial Neural Networks. The Dynamic Link Architecture exploits correlations in the finescale temporal structure of cellular signals in order to group neurons dynamically
Randomized Gossip Algorithms
 IEEE TRANSACTIONS ON INFORMATION THEORY
, 2006
"... Motivated by applications to sensor, peertopeer, and ad hoc networks, we study distributed algorithms, also known as gossip algorithms, for exchanging information and for computing in an arbitrarily connected network of nodes. The topology of such networks changes continuously as new nodes join a ..."
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Cited by 517 (5 self)
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stochastic matrix characterizing the algorithm. Designing the fastest gossip algorithm corresponds to minimizing this eigenvalue, which is a semidefinite program (SDP). In general, SDPs cannot be solved in a distributed fashion; however, exploiting problem structure, we propose a distributed subgradient
The Contourlet Transform: An Efficient Directional Multiresolution Image Representation
 IEEE TRANSACTIONS ON IMAGE PROCESSING
"... The limitations of commonly used separable extensions of onedimensional transforms, such as the Fourier and wavelet transforms, in capturing the geometry of image edges are well known. In this paper, we pursue a “true” twodimensional transform that can capture the intrinsic geometrical structure t ..."
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Cited by 510 (20 self)
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The limitations of commonly used separable extensions of onedimensional transforms, such as the Fourier and wavelet transforms, in capturing the geometry of image edges are well known. In this paper, we pursue a “true” twodimensional transform that can capture the intrinsic geometrical structure
ViewDependent Refinement of Progressive Meshes
"... Levelofdetail (LOD) representations are an important tool for realtime rendering of complex geometric environments. The previously introduced progressive mesh representation defines for an arbitrary triangle mesh a sequence of approximating meshes optimized for viewindependent LOD. In this paper, ..."
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Cited by 456 (5 self)
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Levelofdetail (LOD) representations are an important tool for realtime rendering of complex geometric environments. The previously introduced progressive mesh representation defines for an arbitrary triangle mesh a sequence of approximating meshes optimized for viewindependent LOD. In this paper
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