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The SWISS-PROT protein sequence database and its supplement TrEMBL in 2000

by Amos Bairoch, Rolf Apweiler - Nucleic Acids Res , 2000
"... SWISS-PROT is a curated protein sequence database which strives to provide a high level of annotation (such as the description of the function of a protein, its domains structure, post-translational modifications, variants, etc.), a minimal level of redundancy and high level of integration with othe ..."
Abstract - Cited by 773 (21 self) - Add to MetaCart
with other databases. Recent developments of the database include format and content enhancements, cross-references to additional databases, new documentation files and improvements to TrEMBL, a computer-annotated supplement to SWISS-PROT. TrEMBL consists of entries in SWISS-PROT-like format derived from

Database resources of the National Center for Biotechnology Information

by David L. Wheeler, Tanya Barrett, Dennis A. Benson, Stephen H. Bryant, Kathi Canese, Vyacheslav Chetvernin, Deanna M. Church, Michael Dicuccio, Ron Edgar, Scott Federhen, Lewis Y. Geer, Yuri Kapustin, Oleg Khovayko, David L, David J. Lipman, Thomas L. Madden, Donna R. Maglott, James Ostell, Vadim Miller, Kim D. Pruitt, Gregory D. Schuler, Edwin Sequeira, Steven T. Sherry, Karl Sirotkin, Re Souvorov, Grigory Starchenko, Roman L. Tatusov, Tatiana A. Tatusova, Lukas Wagner, Eugene Yaschenko - Nucleic Acids Res , 2008
"... In addition to maintaining the GenBankÒ nucleic acid sequence database, the National Center for Biotechnology Information (NCBI) provides analysis and retrieval resources for the data in GenBank and other biological data made available through NCBI’s Web site. NCBI resources include Entrez, ..."
Abstract - Cited by 979 (15 self) - Add to MetaCart
In addition to maintaining the GenBankÒ nucleic acid sequence database, the National Center for Biotechnology Information (NCBI) provides analysis and retrieval resources for the data in GenBank and other biological data made available through NCBI’s Web site. NCBI resources include Entrez,

Classical negation in logic programs and disjunctive databases

by Michael Gelfond, Vladimir Lifschitz - New Generation Computing , 1991
"... An important limitation of traditional logic programming as a knowledge representation tool, in comparison with classical logic, is that logic programming does not allow us to deal directly with incomplete information. In order to overcome this limitation, we extend the class of general logic progra ..."
Abstract - Cited by 1044 (73 self) - Add to MetaCart
programs by including classical negation, in addition to negation-as-failure. The semantics of such extended programs is based on the method of stable models. The concept of a disjunctive database can be extended in a similar way. We show that some facts of commonsense knowledge can be represented by logic

The SWISS-PROT protein sequence data bank and its supplement TrEMBL in 1999

by Amos Bairoch, Rolf Apweiler - Nucleic Acids Res , 1999
"... SWISS-PROT is a curated protein sequence database which strives to provide a high level of annotation (such as the description of the function of a protein, its domain structure, post-translational modifications, variants, etc.), a minimal level of redundancy and high level of integration with other ..."
Abstract - Cited by 624 (5 self) - Add to MetaCart
with other databases. Recent developments of the database include: cross-references to additional databases; a variety of new documentation files and improvements to TrEMBL, a computer annotated supplement to SWISS-PROT. TrEMBL consists of entries in SWISS-PROT-like format derived from the translation of all

Gapped BLAST and PSI-BLAST: a new generation of protein database search programs.

by Stephen F Altschul , Thomas L Madden , Alejandro A Schäffer , Jinghui Zhang , Zheng Zhang , Webb Miller , David J Lipman - Nucleic Acids Res. , 1997
"... ABSTRACT The BLAST programs are widely used tools for searching protein and DNA databases for sequence similarities. For protein comparisons, a variety of definitional, algorithmic and statistical refinements described here permits the execution time of the BLAST programs to be decreased substantia ..."
Abstract - Cited by 8572 (88 self) - Add to MetaCart
ABSTRACT The BLAST programs are widely used tools for searching protein and DNA databases for sequence similarities. For protein comparisons, a variety of definitional, algorithmic and statistical refinements described here permits the execution time of the BLAST programs to be decreased

Calibrating noise to sensitivity in private data analysis

by Cynthia Dwork, Frank Mcsherry, Kobbi Nissim, Adam Smith - In Proceedings of the 3rd Theory of Cryptography Conference , 2006
"... Abstract. We continue a line of research initiated in [10, 11] on privacypreserving statistical databases. Consider a trusted server that holds a database of sensitive information. Given a query function f mapping databases to reals, the so-called true answer is the result of applying f to the datab ..."
Abstract - Cited by 649 (60 self) - Add to MetaCart
to the database. To protect privacy, the true answer is perturbed by the addition of random noise generated according to a carefully chosen distribution, and this response, the true answer plus noise, is returned to the user. Previous work focused on the case of noisy sums, in which f =P i g(xi), where xi denotes

Markov Logic Networks

by Matthew Richardson, Pedro Domingos - MACHINE LEARNING , 2006
"... We propose a simple approach to combining first-order logic and probabilistic graphical models in a single representation. A Markov logic network (MLN) is a first-order knowledge base with a weight attached to each formula (or clause). Together with a set of constants representing objects in the ..."
Abstract - Cited by 816 (39 self) - Add to MetaCart
learned from relational databases by iteratively optimizing a pseudo-likelihood measure. Optionally, additional clauses are learned using inductive logic programming techniques. Experiments with a real-world database and knowledge base in a university domain illustrate the promise of this approach.

Integrating classification and association rule mining

by Bing Liu, Wynne Hsu, Yiming Ma - In Proc of KDD , 1998
"... Classification rule mining aims to discover a small set of rules in the database that forms an accurate classifier. Association rule mining finds all the rules existing in the database that satisfy some minimum support and minimum confidence constraints. For association rule mining, the target of di ..."
Abstract - Cited by 578 (21 self) - Add to MetaCart
Classification rule mining aims to discover a small set of rules in the database that forms an accurate classifier. Association rule mining finds all the rules existing in the database that satisfy some minimum support and minimum confidence constraints. For association rule mining, the target

View-Based and Modular Eigenspaces for Face Recognition

by Alex Pentland, Baback Moghaddam, Thad Starner - IEEE INTERNATIONAL CONFERENCE ON COMPUTER VISION & PATTERN RECOGNITION , 1994
"... In this work we describe experiments with eigenfaces for recognition and interactive search in a large-scale face database. Accurate visual recognition is demonstrated using a database of o(10^3) faces. The problem of recognition under general viewing orientation is also explained. A view-based mul ..."
Abstract - Cited by 781 (15 self) - Add to MetaCart
In this work we describe experiments with eigenfaces for recognition and interactive search in a large-scale face database. Accurate visual recognition is demonstrated using a database of o(10^3) faces. The problem of recognition under general viewing orientation is also explained. A view

Data Mining: Concepts and Techniques

by Jiawei Han, Micheline Kamber , 2000
"... Our capabilities of both generating and collecting data have been increasing rapidly in the last several decades. Contributing factors include the widespread use of bar codes for most commercial products, the computerization of many business, scientific and government transactions and managements, a ..."
Abstract - Cited by 3142 (23 self) - Add to MetaCart
, and advances in data collection tools ranging from scanned texture and image platforms, to on-line instrumentation in manufacturing and shopping, and to satellite remote sensing systems. In addition, popular use of the World Wide Web as a global information system has flooded us with a tremendous amount
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