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The PIR-International Protein Sequence Database

by Winona C. Barker, John S. Garavelli, Peter B. Mcgarvey, Christopher R. Marzec, Bruce C. Orcutt, Geetha Y., Geetha Y. Srinivasarao, Lai-su L. Yeh, Robert S. Ledley, Hans-werner Mewes, Friedhelm Pfeiffer, Akira Tsugita, Cathy Wu , 1999
"... The Protein Information Resource (PIR; http://wwwnbrf. georgetown.edu/pir/ ) supports research on molecular evolution, functional genomics, and computational biology by maintaining a comprehensive, non-redundant, well-organized and freely available protein sequence database. Since 1988 the database ..."
Abstract - Cited by 56 (1 self) - Add to MetaCart
has been maintained collaboratively by PIR-International, an international association of data collection centers cooperating to develop this resource during a period of explosive growth in new sequence data and new computer technologies. The PIR Protein Sequence Database entries are classified

The Protein Information Resource (PIR) and the PIR-international protein sequence database

by David G. George, Robert J. Dodson, John S. Garavelli, Daniel H. Haft, Lois T. Hunt, Christopher R. Marzec, Bruce C. Orcutt, Kathryn E. Sidman, Geetha Y. Srinivasarao, Lai-su L. Yeh, Leslie M. Arminski, Robert S. Ledley, Akira Tsugita, Winona C. Barker - Nucleic Acids Res , 1997
"... From its origin, the PIR has aspired to support research in computational biology and genomics through the compilation of a comprehensive, quality controlled and well-organized protein sequence information resource. The resource originated with the pioneering work of the late Margaret O. Dayhoff in ..."
Abstract - Cited by 6 (0 self) - Add to MetaCart
in the early 1960s. Since 1988, the Protein Sequence Database has been maintained collaboratively by PIR-International, an association of macromolecular sequence data collection centers dedicated to fostering international cooperation as an essential element in the development of scientific databases. The work

Protein Sequences of the German National Center for

by H. W. Mewes, J. Hani, F. Pfeiffer, D. Frishman, Martinsried Near Munich , 1997
"... Germany, is involved in a number of data collection activities, including a comprehensive database of the yeast genome, a database reflecting the progress in sequencing the Arabidopsis thaliana genome, the systematic analysis of other small genomes and the collection of protein sequence data within ..."
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the framework of the PIR-International Protein Sequence Database (described elsewhere in this volume). Through its WWW server

MIPS: a database for genomes and protein sequences

by H. W. Mewes, D. Frishman, U. Gildener, G. Mannhaupt, K. Mayer, M. Mokrejs, B. Morgenstern, M. Minsterkötter, S. Rudd, B. Weil - Nucleic Acids Res , 2002
"... The Munich Information Center for Protein Sequences (MIPS-GSF, Neuherberg, Germany) continues to provide genome-related information in a systematic way. MIPS supports both national and European sequencing and functional analysis projects, develops and maintains automatically generated and manually a ..."
Abstract - Cited by 336 (10 self) - Add to MetaCart
-Netzwerk Bioinformatik) networks. The Arabidospsis thaliana database (MATDB), the database of mitochondrial proteins (MITOP) and our contribution to the PIR International Protein Sequence Database have been described elsewhere [Schoof et aL (2002) Nucleic Acids Res., 30, 91-93; Scharfe et al. (2000) Nucleic Acids Res

MIPS: a database for protein sequences and complete genomes

by H. W. Mewes, J. Hani, F. Pfeiffer and D. Frishman, F. Pfeiffer, D. Frishman , 1998
"... The MIPS group [Munich Information Center for Protein Sequences of the German National Center for Environment and Health (GSF)] at the Max-PlanckInstitute for Biochemistry, Martinsried near Munich, Germany, is involved in a number of data collection activities, including a comprehensive database of ..."
Abstract - Cited by 52 (0 self) - Add to MetaCart
of the yeast genome, a database reflecting the progress in sequencing the Arabidopsis thaliana genome, the systematic analysis of other small genomes and the collection of protein sequence data within the framework of the PIR-International Protein Sequence Database (described elsewhere in this volume). Through

Pfam protein families database

by Robert D. Finn, John Tate, Jaina Mistry, Penny C. Coggill, Stephen John Sammut, Hans-rudolf Hotz, Goran Ceric, Kristoffer Forslund, Sean R. Eddy, Erik L. L. Sonnhammer, Alex Bateman - Nucleic Acids Research, 2008, 36(Database issue): D281–D288
"... Pfam is a comprehensive collection of protein domains and families, represented as multiple sequence alignments and as profile hidden Markov models. The current release of Pfam (22.0) contains 9318 protein families. Pfam is now based not only on the UniProtKB sequence database, but also on NCBI GenP ..."
Abstract - Cited by 771 (13 self) - Add to MetaCart
Pfam is a comprehensive collection of protein domains and families, represented as multiple sequence alignments and as profile hidden Markov models. The current release of Pfam (22.0) contains 9318 protein families. Pfam is now based not only on the UniProtKB sequence database, but also on NCBI Gen

SCOP: a structural classification of proteins database for the investigation of sequences and structures.

by Tim J P Hubbard , Bart Ailey , Steven E Brenner , Alexey G Murzin , Cyrus Chothia - J. Mol. Biol. , 1995
"... ABSTRACT The Structural Classification of Proteins (SCOP) database provides a detailed and comprehensive description of the relationships of all known proteins structures. The classification is on hierarchical levels: the first two levels, family and superfamily, describe near and far evolutionary ..."
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relationships; the third, fold, describes geometrical relationships. The distinction between evolutionary relationships and those that arise from the physics and chemistry of proteins is a feature that is unique to this database, so far. The database can be used as a source of data to calibrate sequence search

The SWISS-PROT protein sequence database and its supplement TrEMBL in 2000

by Amos Bairoch, Rolf Apweiler - Nucleic Acids Res , 2000
"... SWISS-PROT is a curated protein sequence database which strives to provide a high level of annotation (such as the description of the function of a protein, its domains structure, post-translational modifications, variants, etc.), a minimal level of redundancy and high level of integration with othe ..."
Abstract - Cited by 773 (21 self) - Add to MetaCart
SWISS-PROT is a curated protein sequence database which strives to provide a high level of annotation (such as the description of the function of a protein, its domains structure, post-translational modifications, variants, etc.), a minimal level of redundancy and high level of integration

NCBI reference sequence (RefSeq): a curated non-redundant sequence database of genomes, transcripts and proteins

by Kim D. Pruitt, Tatiana Tatusova, Donna R. Maglott - NUCLEIC ACIDS RES , 2005
"... ..."
Abstract - Cited by 605 (6 self) - Add to MetaCart
Abstract not found

An approach to correlate tandem mass spectral data of peptides with amino acid sequences in a protein database

by Jimmy K. Eng, Ashley L. Mccormack, John R. Yates - J. Am. Soc. Mass Spectrom , 1994
"... A method to correlate the uninterpreted tandem mass spectra of peptides produced under low energy (lo-50 eV) collision conditions with amino acid sequences in the Genpept database has been developed. In this method the protein database is searched to identify linear amino acid sequences within a mas ..."
Abstract - Cited by 944 (19 self) - Add to MetaCart
A method to correlate the uninterpreted tandem mass spectra of peptides produced under low energy (lo-50 eV) collision conditions with amino acid sequences in the Genpept database has been developed. In this method the protein database is searched to identify linear amino acid sequences within a
Results 1 - 10 of 3,599