Results 1 - 10 of 60

Bio2RDF Release 3: A Larger Connected Network of Linked Data for the Life Sciences

by Michel Dumontier, Alison Callahan, Jose Cruz-toledo, Peter Ansell, François Belleau, Arnaud Droit
"... Abstract. Bio2RDF is an open source project to generate and provide Linked Data for the Life Sciences. Here, we report on a third coordinated release of ~11 billion triples across 30 biomedical databases and datasets, representing a 10 fold increase in the number of triples since Bio2RDF Release 2 ( ..."
Abstract - Add to MetaCart
Abstract. Bio2RDF is an open source project to generate and provide Linked Data for the Life Sciences. Here, we report on a third coordinated release of ~11 billion triples across 30 biomedical databases and datasets, representing a 10 fold increase in the number of triples since Bio2RDF Release 2

Bio2RDF Network Of Linked Data

by Re Nolin, Peter Ansell, François Belleau, Kingsley Idehen, Nicole Tourigny, Paul Roe, James M Hogan, Université Laval
"... create a network of coherent linked data across the life sciences databases. The project is open source and the following result is from the input of this community. Results: Databases have been converted and linked together with semantic web technologies. The process is to normalize any external UR ..."
Abstract - Add to MetaCart
create a network of coherent linked data across the life sciences databases. The project is open source and the following result is from the input of this community. Results: Databases have been converted and linked together with semantic web technologies. The process is to normalize any external

Building Linked Open Data of the Life Science Dictionary

by Yasunori Yamamoto, Shoko Kawamoto
"... Abstract. There is a growing need for efficient and integrated access to databases provided by diverse institutions. Using a linked data design pattern allows the diverse data on the Internet to be linked effectively and accessed efficiently by computers. In addition, providing a dictionary to trans ..."
Abstract - Add to MetaCart
to translate words into another language in Resource Description Framework (RDF) is useful to cross a language barrier such as English and Japanese when we want to access datasets in multiple languages. Here, we built a Linked Open Dataset of the Life Science Dictionary (LSD) with links to DBpedia. LSD

Ontology Mapping for Life Science Linked Data

by Amrapali Zaveri , Michel Dumontier
"... Abstract. Bio2RDF is an open-source project that offers a large and connected knowledge graph of Life Science Linked Data. Each dataset is expressed using its own vocabulary, thereby hindering integration, search, query, and browse data across similar or identical types of data. With growth and con ..."
Abstract - Add to MetaCart
Abstract. Bio2RDF is an open-source project that offers a large and connected knowledge graph of Life Science Linked Data. Each dataset is expressed using its own vocabulary, thereby hindering integration, search, query, and browse data across similar or identical types of data. With growth

An Unsupervised Approach for Acquiring Ontologies and RDF Data from Online Life Science Databases

by Saqib Mir, Steffen Staab, Isabel Rojas
"... Abstract. In the Linked Open Data cloud one of the largest data sets, comprising of 2.5 billion triples, is derived from the Life Science domain. Yet this represents a small fraction of the total number of publicly available data sources on the Web. We briefly describe past attempts to transform spe ..."
Abstract - Cited by 1 (0 self) - Add to MetaCart
approach to three online databases to extract RDF data. Our results indicate that this approach can be used to bootstrap and speed up the migration of life science data into the Linked Open Data cloud. 1

Using CDISC ODM and the RDF Data Cube for the Semantic Enrichment of Longitudinal Clinical Trial Data

by Hugo Leroux, Laurent Lefort
"... Abstract. The development of ontology, linked data standards and tools for semantic enrichment, opens new opportunities to analyse and reuse the clinical data collected as part of clinical trials and longitudinal studies. This paper presents our approach on the semantic enrichment of the data collec ..."
Abstract - Cited by 3 (1 self) - Add to MetaCart
: SNOMED CT and the Australian Medical Terminology. We also discuss how our approach could be extended to take advantage of past and present Linked Open Data initiatives in the Health Care and Life Sciences community.

Improved dataset coverage and interoperability with Bio2RDF Release 2

by Alison Callahan, Jose Cruz-toledo, Peter Ansell, Dana Klassen, Giovanni Tummarello, Michel Dumontier
"... Abstract. Bio2RDF is an open source project that uses Semantic Web technologies to create and provide the largest network of Linked Data for the life sciences. Here, we present the second release of the Bio2RDF project which features updated, open-source scripts, a resource registry for IRI mapping ..."
Abstract - Add to MetaCart
Abstract. Bio2RDF is an open source project that uses Semantic Web technologies to create and provide the largest network of Linked Data for the life sciences. Here, we present the second release of the Bio2RDF project which features updated, open-source scripts, a resource registry for IRI mapping

Linked data and provenance in biological data webs

by Jun Zhao, Alistair Miles, Graham Klyne, David Shotton - Brief. Bioinformatics , 2008
"... The Web is now being used as a platform for publishing and linking life science data. The Web’s linking architecture can be exploited to join heterogeneous data from multiple sources. However, as data are frequently being updated in a decentralized environment, provenance information becomes critica ..."
Abstract - Cited by 4 (2 self) - Add to MetaCart
The Web is now being used as a platform for publishing and linking life science data. The Web’s linking architecture can be exploited to join heterogeneous data from multiple sources. However, as data are frequently being updated in a decentralized environment, provenance information becomes

Life Sciences Pilot Services

by Daniel Eisinger A, George Tsatsaronis A, Alina Petrova A, Karanastasis B , 2015
"... The rapidly growing wealth of published scientific work, produced by re-searchers and scholars, has resulted in a pressing need for more effective processes towards reviewing scientific articles and research data, organizing data journals, as well as for improved tools and techniques for bibliograph ..."
Abstract - Add to MetaCart
for bibliographic analysis and management of scientometrics. The ongoing EU research project OpenScienceLink aims to address these needs, as well as offer a wide range of opportunities for better collaboration between researchers, by introducing a web-based Platform which offers efficient and intelligent

IOS Press Special issue on Linked Data for Health Care and the Life Sciences Editorial

by Mikel Egaña Aranguren A, Jesualdo Tomás Fernández-breis B, Michel Dumontier C
"... been a test-bed for the standards proposed by the W3C to build the Semantic Web1: since HCLS is descrip-tive by nature and its descriptions have traditionally been produced according to ad-hoc schemas in iso-lated resources, HCLS offers an ideal use case for tech-nologies like RDF2, SPARQL3 and OWL4 ..."
Abstract - Add to MetaCart
, considerably contribut-ing to the Linked Open Data (LOD) endeavour, with datasets like Bio2RDF [2] and Linked Open Drug Data (LODD) [5]. As the LOD network grows, producers and con-sumers alike are facing new challenges regarding inter-operable vocabularies, filtering, graphical interfaces, best practices
Results 1 - 10 of 60