Results 1 - 10 of 215

Sungear: interactive visualization and functional analysis of genomic datasets

by Christopher S. Poultney, Rodrigo A. Gutiérrez, Manpreet S. Katari, Miriam L. Gifford, Bradford Paley, Gloria M. Coruzzi, Dennis E. Shasha - Bioinformatics , 2007
"... Summary: Sungear is a software system that supports a rapid, visually interactive and biologist-driven comparison of large data sets. The data sets can come from microarray experiments (e.g. genes induced in each experiment), from comparative genomics (e.g. genes present in each genome), or even fro ..."
Abstract - Cited by 2 (1 self) - Add to MetaCart
Summary: Sungear is a software system that supports a rapid, visually interactive and biologist-driven comparison of large data sets. The data sets can come from microarray experiments (e.g. genes induced in each experiment), from comparative genomics (e.g. genes present in each genome), or even

of genomic datasets

by Christopher S. Poultney, Rodrigo A. Gutiérrez, Manpreet S. Katari, Miriam L. Gifford, W. Bradford Paley, Gloria M. Coruzzi, Dennis E. Shasha
"... Sungear: interactive visualization and functional analysis ..."
Abstract - Cited by 1 (0 self) - Add to MetaCart
Sungear: interactive visualization and functional analysis

Galaxy: A platform for interactive large-scale genome analysis

by Belinda Giardine, Cathy Riemer, Ross C. Hardison, Richard Burhans, Prachi Shah, Yi Zhang, Daniel Blankenberg, Istvan Albert, Webb Miller, W. James Kent, Anton Nekrutenko - Genome Res , 2005
"... Accessing and analyzing the exponentially expanding genomic sequence and functional data pose a challenge for biomedical researchers. Here we describe an interactive system, Galaxy, that combines the power of existing genome annotation databases with a simple Web portal to enable users to search rem ..."
Abstract - Cited by 236 (17 self) - Add to MetaCart
Accessing and analyzing the exponentially expanding genomic sequence and functional data pose a challenge for biomedical researchers. Here we describe an interactive system, Galaxy, that combines the power of existing genome annotation databases with a simple Web portal to enable users to search

Integrative genomics viewer

by James T. Robinson, Helga Thorvaldsdóttir, Wendy Winckler, Mitchell Guttman, Eric S, Gad Getz, Jill P. Mesirov - Nat Biotechnol , 2011
"... Rapid improvements in sequencing and array-based platforms are resulting in a flood of diverse genome-wide data, including data from exome and whole genome sequencing, epigenetic surveys, expression profiling of coding and non-coding RNAs, SNP and copy number profiling, and functional assays. Analys ..."
Abstract - Cited by 123 (1 self) - Add to MetaCart
. Analysis of these large, diverse datasets holds the promise of a more comprehensive understanding of the genome and its relation to human disease. Experienced and knowledgeable human review is an essential component of this process, complementing computational approaches. This calls for efficient

Interactive Poster: 3D Visualization of MIDI Dataset

by Reiko Miyazaki, Issei Fujishiro
"... When editing and playing a MIDI dataset, users usually rely on so-called sequence software systems, which offer a variety of editwindows, such as staff and piano-roll, for different tasks. Since a limited number of related parameters appear in each of the editwindows, the users are forced to open mu ..."
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virtual space, where the users are allowed to perform visual exploration of a given MIDI dataset in an immersive and intuitive manner. Although a few studies on 3D music visualization can be found in the literature (e.g.,[1];[2]), the existing systems offer restricted functionalities of overview

Interactive visual exploration of a large spatio-temporal dataset: reflections on a geovisualization mashup

by Jo Wood, Jason Dykes, Aidan Slingsby, Keith Clarke - IEEE transactions on visualization and computer graphics , 2007
"... Abstract — Exploratory visual analysis is useful for the preliminary investigation of large structured, multifaceted spatio-temporal datasets. This process requires the selection and aggregation of records by time, space and attribute, the ability to transform data and the flexibility to apply appro ..."
Abstract - Cited by 50 (7 self) - Add to MetaCart
Abstract — Exploratory visual analysis is useful for the preliminary investigation of large structured, multifaceted spatio-temporal datasets. This process requires the selection and aggregation of records by time, space and attribute, the ability to transform data and the flexibility to apply

VISUALIZING AND ANALYZING LARGE AND DETAILED 3D DATASETS

by Louis Borgeat, Guy Godin, François Blais, J-angelo Beraldin, Guillaume Poirier
"... This paper presents a set of tools developed to model, visualize and analyze large 3D datasets built from 2D and 3D sensor data. These tools, grouped under the Atelier3D framework, first include a technique for processing and interactively visualizing datasets made of hundreds of millions 3D samples ..."
Abstract - Cited by 2 (0 self) - Add to MetaCart
This paper presents a set of tools developed to model, visualize and analyze large 3D datasets built from 2D and 3D sensor data. These tools, grouped under the Atelier3D framework, first include a technique for processing and interactively visualizing datasets made of hundreds of millions 3D

Enhancing Interactive Visual Data Analysis by Statistical Functionality

by Jürgen Platzer
"... Both information visualization and statistics analyse high dimensional data, but these sciences apply different systems to explore datasets. While techniques of the former field makes use of the user’s pattern recognition skills, statistical algorithms apply the capabilities of computers. Based on t ..."
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Both information visualization and statistics analyse high dimensional data, but these sciences apply different systems to explore datasets. While techniques of the former field makes use of the user’s pattern recognition skills, statistical algorithms apply the capabilities of computers. Based

functional genomics in the big data era

by Thanet Praneenararat, Toshihisa Takagi, Wataru Iwasaki , 2012
"... Background: The overwhelming amount of network data in functional genomics is making its visualization cluttered with jumbling nodes and edges. Such cluttered network visualization, which is known as “hair-balls”, is significantly hindering data interpretation and analysis of researchers. Effective ..."
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Background: The overwhelming amount of network data in functional genomics is making its visualization cluttered with jumbling nodes and edges. Such cluttered network visualization, which is known as “hair-balls”, is significantly hindering data interpretation and analysis of researchers. Effective

VisANT: dataintegrating visual framework for biological networks and modules

by Zhenjun Hu, Joe Mellor, Jie Wu, Takuji Yamada, Dustin Holloway, Charles Delisi - Nucleic Acids Res , 2005
"... VisANT is a web-based software framework for visu-alizing and analyzing many types of networks of bio-logical interactions and associations. Networks are a useful computational tool for representing many types of biological data, such as biomolecular inter-actions, cellular pathways and functional m ..."
Abstract - Cited by 69 (11 self) - Add to MetaCart
modules. Given user-defined sets of interactions or groupings between genes or proteins, VisANT provides: (i) a visual interface for combining and annotating net-work data, (ii) supporting function and annotation data for different genomes from the Gene Ontology and KEGG databases and (iii
Results 1 - 10 of 215