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Streaming Algorithms for Partitioning Integer Sequences
"... Abstract. We study the problem of partitioning integer sequences in the onepass data streaming model. Given is an input stream of integers X ∈ {0, 1,...,m}n of length n with maximum element m, and a parameter p. The goal is to output the positions of separators splitting the input stream into p co ..."
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Abstract. We study the problem of partitioning integer sequences in the onepass data streaming model. Given is an input stream of integers X ∈ {0, 1,...,m}n of length n with maximum element m, and a parameter p. The goal is to output the positions of separators splitting the input stream into p
Muscle: multiple sequence alignment with high accuracy and high throughput
 NUCLEIC ACIDS RES
, 2004
"... We describe MUSCLE, a new computer program for creating multiple alignments of protein sequences. Elements of the algorithm include fast distance estimation using kmer counting, progressive alignment using a new profile function we call the logexpectation score, and refinement using treedependent r ..."
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Cited by 2509 (7 self)
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We describe MUSCLE, a new computer program for creating multiple alignments of protein sequences. Elements of the algorithm include fast distance estimation using kmer counting, progressive alignment using a new profile function we call the logexpectation score, and refinement using tree
A Highly Adaptive Distributed Routing Algorithm for Mobile Wireless Networks
, 1997
"... We present a new distributed routing protocol for mobile, multihop, wireless networks. The protocol is one of a family of protocols which we term "link reversal" algorithms. The protocol's reaction is structured as a temporallyordered sequence of diffusing computations; each computat ..."
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Cited by 1100 (6 self)
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We present a new distributed routing protocol for mobile, multihop, wireless networks. The protocol is one of a family of protocols which we term "link reversal" algorithms. The protocol's reaction is structured as a temporallyordered sequence of diffusing computations; each
Fast Folding and Comparison of RNA Secondary Structures (The Vienna RNA Package)
"... Computer codes for computation and comparison of RNA secondary structures, the Vienna RNA package, are presented, that are based on dynamic programming algorithms and aim at predictions of structures with minimum free energies as well as at computations of the equilibrium partition functions and bas ..."
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Cited by 809 (117 self)
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Computer codes for computation and comparison of RNA secondary structures, the Vienna RNA package, are presented, that are based on dynamic programming algorithms and aim at predictions of structures with minimum free energies as well as at computations of the equilibrium partition functions
Interior Point Methods in Semidefinite Programming with Applications to Combinatorial Optimization
 SIAM Journal on Optimization
, 1993
"... We study the semidefinite programming problem (SDP), i.e the problem of optimization of a linear function of a symmetric matrix subject to linear equality constraints and the additional condition that the matrix be positive semidefinite. First we review the classical cone duality as specialized to S ..."
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Cited by 547 (12 self)
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mechanical way to algorithms for SDP with proofs of convergence and polynomial time complexity also carrying over in a similar fashion. Finally we study the significance of these results in a variety of combinatorial optimization problems including the general 01 integer programs, the maximum clique
Factoring wavelet transforms into lifting steps
 J. FOURIER ANAL. APPL
, 1998
"... This paper is essentially tutorial in nature. We show how any discrete wavelet transform or two band subband filtering with finite filters can be decomposed into a finite sequence of simple filtering steps, which we call lifting steps but that are also known as ladder structures. This decompositio ..."
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Cited by 584 (8 self)
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This paper is essentially tutorial in nature. We show how any discrete wavelet transform or two band subband filtering with finite filters can be decomposed into a finite sequence of simple filtering steps, which we call lifting steps but that are also known as ladder structures
DavenportSchinzel Sequences and Their Geometric Applications
, 1998
"... An (n; s) DavenportSchinzel sequence, for positive integers n and s, is a sequence composed of n distinct symbols with the properties that no two adjacent elements are equal, and that it does not contain, as a (possibly noncontiguous) subsequence, any alternation a \Delta \Delta \Delta b \Delta \ ..."
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Cited by 439 (105 self)
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An (n; s) DavenportSchinzel sequence, for positive integers n and s, is a sequence composed of n distinct symbols with the properties that no two adjacent elements are equal, and that it does not contain, as a (possibly noncontiguous) subsequence, any alternation a \Delta \Delta \Delta b \Delta
Approximate Frequency Counts over Data Streams
 VLDB
, 2002
"... We present algorithms for computing frequency counts exceeding a userspecified threshold over data streams. Our algorithms are simple and have provably small memory footprints. Although the output is approximate, the error is guaranteed not to exceed a userspecified parameter. Our algorithms can e ..."
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Cited by 418 (1 self)
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We present algorithms for computing frequency counts exceeding a userspecified threshold over data streams. Our algorithms are simple and have provably small memory footprints. Although the output is approximate, the error is guaranteed not to exceed a userspecified parameter. Our algorithms can
Multilevel hypergraph partitioning: Application in VLSI domain
 IEEE TRANS. VERY LARGE SCALE INTEGRATION (VLSI) SYSTEMS
, 1999
"... In this paper, we present a new hypergraphpartitioning algorithm that is based on the multilevel paradigm. In the multilevel paradigm, a sequence of successively coarser hypergraphs is constructed. A bisection of the smallest hypergraph is computed and it is used to obtain a bisection of the origina ..."
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Cited by 315 (22 self)
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In this paper, we present a new hypergraphpartitioning algorithm that is based on the multilevel paradigm. In the multilevel paradigm, a sequence of successively coarser hypergraphs is constructed. A bisection of the smallest hypergraph is computed and it is used to obtain a bisection
Recovering nonrigid 3D shape from image streams
 Conf. on Computer Vision and Pattern Recognition
, 2000
"... This paper addresses the problem of recovering 3D nonrigid shape models from image sequences. For example, given a video recording of a talking person, we would like to estimate a 3D model of the lips and the full face and its internal modes of variation. Many solutions that recover 3D shape from 2D ..."
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Cited by 270 (7 self)
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this simple but effective algorithm on video sequences of people and animals. We were able to recover 3D nonrigid facial models with high accuracy. 1
Results 1  10
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