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ii This dissertation is dedicated to the memory of my mother Mary L. Hodges. iii ACKNOWLEDGEMENT Gratitude is extended to many for the completion of this dissertation, particularly those who inspired and supported me. First, I thank God for making all of this possible and for allowing me to keep the faith and move forward through many challenges. Second, I am profoundly grateful and indebted to my dissertation Chair Dr. Gary Burnett for sharing his knowledge, constructive criticism, and time. His editing and the ability to ask thought provoking questions injected more clarity into this work. I am forever grateful to Dr. Thomas Hart for his avid support, first as a former chair and later as a committee member during his retirement. Thanks to Dr. Corinne Jorgensen for serving on my committee and for providing encouragement

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International Conference Proceedings of

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Spliced alignment and its application in

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