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891,409
Symbolic Model Checking for Realtime Systems
 INFORMATION AND COMPUTATION
, 1992
"... We describe finitestate programs over realnumbered time in a guardedcommand language with realvalued clocks or, equivalently, as finite automata with realvalued clocks. Model checking answers the question which states of a realtime program satisfy a branchingtime specification (given in an ..."
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Cited by 574 (50 self)
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We describe finitestate programs over realnumbered time in a guardedcommand language with realvalued clocks or, equivalently, as finite automata with realvalued clocks. Model checking answers the question which states of a realtime program satisfy a branchingtime specification (given
Symbolic Model Checking without BDDs
, 1999
"... Symbolic Model Checking [3, 14] has proven to be a powerful technique for the verification of reactive systems. BDDs [2] have traditionally been used as a symbolic representation of the system. In this paper we show how boolean decision procedures, like Stalmarck's Method [16] or the Davis ..."
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Cited by 910 (74 self)
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Symbolic Model Checking [3, 14] has proven to be a powerful technique for the verification of reactive systems. BDDs [2] have traditionally been used as a symbolic representation of the system. In this paper we show how boolean decision procedures, like Stalmarck's Method [16] or the Davis
Basecalling of automated sequencer traces using phred. I. Accuracy Assessment
 GENOME RES
, 1998
"... The availability of massive amounts of DNA sequence information has begun to revolutionize the practice of biology. As a result, current largescale sequencing output, while impressive, is not adequate to keep pace with growing demand and, in particular, is far short of what will be required to obta ..."
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Cited by 1602 (4 self)
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to obtain the 3billionbase human genome sequence by the target date of 2005. To reach this goal, improved automation will be essential, and it is particularly important that human involvement in sequence data processing be significantly reduced or eliminated. Progress in this respect will require both
A scheduling model for reduced CPU energy
 ANNUAL SYMPOSIUM ON FOUNDATIONS OF COMPUTER SCIENCE
, 1995
"... The energy usage of computer systems is becoming an important consideration, especially for batteryoperated systems. Various methods for reducing energy consumption have been investigated, both at the circuit level and at the operating systems level. In this paper, we propose a simple model of job s ..."
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Cited by 550 (3 self)
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The energy usage of computer systems is becoming an important consideration, especially for batteryoperated systems. Various methods for reducing energy consumption have been investigated, both at the circuit level and at the operating systems level. In this paper, we propose a simple model of job
A greedy algorithm for aligning DNA sequences
 J. COMPUT. BIOL
, 2000
"... For aligning DNA sequences that differ only by sequencing errors, or by equivalent errors from other sources, a greedy algorithm can be much faster than traditional dynamic programming approaches and yet produce an alignment that is guaranteed to be theoretically optimal. We introduce a new greedy a ..."
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Cited by 576 (16 self)
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For aligning DNA sequences that differ only by sequencing errors, or by equivalent errors from other sources, a greedy algorithm can be much faster than traditional dynamic programming approaches and yet produce an alignment that is guaranteed to be theoretically optimal. We introduce a new greedy
Tandem repeats finder: a program to analyze DNA sequences
, 1999
"... A tandem repeat in DNA is two or more contiguous, approximate copies of a pattern of nucleotides. Tandem repeats have been shown to cause human disease, may play a variety of regulatory and evolutionary roles and are important laboratory and analytic tools. Extensive knowledge about pattern size, co ..."
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Cited by 946 (9 self)
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repeats by percent identity and frequency of indels between adjacent pattern copies and use statistically based recognition criteria. We demonstrate the algorithm's speed and its ability to detect tandem repeats that have undergone extensive mutational change by analyzing four sequences: the human
A Critical Point For Random Graphs With A Given Degree Sequence
, 2000
"... Given a sequence of nonnegative real numbers 0 ; 1 ; : : : which sum to 1, we consider random graphs having approximately i n vertices of degree i. Essentially, we show that if P i(i \Gamma 2) i ? 0 then such graphs almost surely have a giant component, while if P i(i \Gamma 2) i ! 0 the ..."
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Cited by 511 (8 self)
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Given a sequence of nonnegative real numbers 0 ; 1 ; : : : which sum to 1, we consider random graphs having approximately i n vertices of degree i. Essentially, we show that if P i(i \Gamma 2) i ? 0 then such graphs almost surely have a giant component, while if P i(i \Gamma 2) i ! 0
Model Checking for Programming Languages using VeriSoft
 IN PROCEEDINGS OF THE 24TH ACM SYMPOSIUM ON PRINCIPLES OF PROGRAMMING LANGUAGES
, 1997
"... Verification by statespace exploration, also often referred to as "model checking", is an effective method for analyzing the correctness of concurrent reactive systems (e.g., communication protocols). Unfortunately, existing modelchecking techniques are restricted to the verification of ..."
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Cited by 442 (13 self)
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Verification by statespace exploration, also often referred to as "model checking", is an effective method for analyzing the correctness of concurrent reactive systems (e.g., communication protocols). Unfortunately, existing modelchecking techniques are restricted to the verification
The SWISSPROT protein sequence data bank and its supplement TrEMBL in 1999
 Nucleic Acids Res
, 1999
"... SWISSPROT is a curated protein sequence database which strives to provide a high level of annotation (such as the description of the function of a protein, its domain structure, posttranslational modifications, variants, etc.), a minimal level of redundancy and high level of integration with other ..."
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Cited by 619 (5 self)
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SWISSPROT is a curated protein sequence database which strives to provide a high level of annotation (such as the description of the function of a protein, its domain structure, posttranslational modifications, variants, etc.), a minimal level of redundancy and high level of integration
FAST VOLUME RENDERING USING A SHEARWARP FACTORIZATION OF THE VIEWING TRANSFORMATION
, 1995
"... Volume rendering is a technique for visualizing 3D arrays of sampled data. It has applications in areas such as medical imaging and scientific visualization, but its use has been limited by its high computational expense. Early implementations of volume rendering used bruteforce techniques that req ..."
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Cited by 541 (2 self)
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family of volume rendering algorithms that reduces rendering times to one second. First we present a scanlineorder volume rendering algorithm that exploits coherence in both the volume data and the image. We show that scanlineorder algorithms are fundamentally more efficient than commonlyused ray
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