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with RNA-seq
"... the integration, annotation and association of historical microarray experiments ..."
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the integration, annotation and association of historical microarray experiments
with RNA-seq
"... This article cites 52 articles, 29 of which can be accessed free at: service Email alerting click heretop right corner of the article or Receive free email alerts when new articles cite this article- sign up in the box at the ..."
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This article cites 52 articles, 29 of which can be accessed free at: service Email alerting click heretop right corner of the article or Receive free email alerts when new articles cite this article- sign up in the box at the
in RNA-Seq Data
"... Genetic variation modulates gene expression transcriptionally or post-transcriptionally, and can profoundly alter an individual’s phenotype. Measuring allelic differential expression at heterozygous loci within an individual, a phenomenon called allele-specific expression (ASE), can assist in identi ..."
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in identifying such factors. Massively parallel DNA and RNA sequencing and advances in bioinformatic methodologies provide an outstanding opportunity to mea-sure ASE genome-wide. In this study, matched DNA and RNA sequencing, genotyping ar-rays and computationally phased haplotypes were integrated
Comparative RNA-Seq ana
"... Comparative RNA-Seq analysis reveals pervasive tissue-specific alternative polyadenylation in Caenorhabditis elegans intestine and muscles Blazie et al. ..."
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Comparative RNA-Seq analysis reveals pervasive tissue-specific alternative polyadenylation in Caenorhabditis elegans intestine and muscles Blazie et al.
Splice event detection and quantification from RNA-seq data
, 2015
"... RNA-seq data can be used for transcript isoform discovery and transcript-level expression studies. Most computational tools for genome-guided transcript isoform analysis (methods that work with RNA-seq data aligned against a reference genome) fall into one of two categories: Methods for the analysis ..."
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for the analysis of splice events, which often rely on transcript annotation, and methods for reconstructing and quantifying full-length transcripts. SGSeq implements a method for the annotation-free detection and quantification of splice events from RNA-seq data. 2
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