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LSQR: An Algorithm for Sparse Linear Equations and Sparse Least Squares
 ACM Trans. Math. Software
, 1982
"... An iterative method is given for solving Ax ~ffi b and minU Ax b 112, where the matrix A is large and sparse. The method is based on the bidiagonalization procedure of Golub and Kahan. It is analytically equivalent to the standard method of conjugate gradients, but possesses more favorable numerica ..."
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Cited by 649 (21 self)
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An iterative method is given for solving Ax ~ffi b and minU Ax b 112, where the matrix A is large and sparse. The method is based on the bidiagonalization procedure of Golub and Kahan. It is analytically equivalent to the standard method of conjugate gradients, but possesses more favorable
The nas parallel benchmarks
 The International Journal of Supercomputer Applications
, 1991
"... A new set of benchmarks has been developed for the performance evaluation of highly parallel supercomputers. These benchmarks consist of ve \parallel kernel " benchmarks and three \simulated application" benchmarks. Together they mimic the computation and data movement characterist ..."
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Cited by 686 (10 self)
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A new set of benchmarks has been developed for the performance evaluation of highly parallel supercomputers. These benchmarks consist of ve \parallel kernel " benchmarks and three \simulated application" benchmarks. Together they mimic the computation and data movement
KSVD: An Algorithm for Designing Overcomplete Dictionaries for Sparse Representation
, 2006
"... In recent years there has been a growing interest in the study of sparse representation of signals. Using an overcomplete dictionary that contains prototype signalatoms, signals are described by sparse linear combinations of these atoms. Applications that use sparse representation are many and inc ..."
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Cited by 930 (41 self)
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by either selecting one from a prespecified set of linear transforms or adapting the dictionary to a set of training signals. Both of these techniques have been considered, but this topic is largely still open. In this paper we propose a novel algorithm for adapting dictionaries in order to achieve sparse
SNOPT: An SQP Algorithm For LargeScale Constrained Optimization
, 2002
"... Sequential quadratic programming (SQP) methods have proved highly effective for solving constrained optimization problems with smooth nonlinear functions in the objective and constraints. Here we consider problems with general inequality constraints (linear and nonlinear). We assume that first deriv ..."
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Cited by 582 (23 self)
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derivatives are available, and that the constraint gradients are sparse. We discuss
Fast Parallel Algorithms for ShortRange Molecular Dynamics
 JOURNAL OF COMPUTATIONAL PHYSICS
, 1995
"... Three parallel algorithms for classical molecular dynamics are presented. The first assigns each processor a fixed subset of atoms; the second assigns each a fixed subset of interatomic forces to compute; the third assigns each a fixed spatial region. The algorithms are suitable for molecular dyn ..."
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Cited by 622 (6 self)
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dynamics models which can be difficult to parallelize efficiently  those with shortrange forces where the neighbors of each atom change rapidly. They can be implemented on any distributedmemory parallel machine which allows for messagepassing of data between independently executing processors
The implementation of the cilk5 multithreaded language
 In PLDI ’98: Proceedings of the ACM SIGPLAN 1998 conference on Programming language design and implementation
, 1998
"... The fth release of the multithreaded language Cilk uses a provably good \workstealing " scheduling algorithm similar to the rst system, but the language has been completely redesigned and the runtime system completely reengineered. The eciency of the new implementation was aided by a clear st ..."
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Cited by 493 (30 self)
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rst " principle has led to a portable Cilk5 implementation in which the typical cost of spawning a parallel thread is only between 2 and 6 times the cost of a C function call on a variety of contemporary machines. Many Cilk programs run on one processor with virtually no degradation compared
GPFS: A SharedDisk File System for Large Computing Clusters
 In Proceedings of the 2002 Conference on File and Storage Technologies (FAST
, 2002
"... GPFS is IBM's parallel, shareddisk file system for cluster computers, available on the RS/6000 SP parallel supercomputer and on Linux clusters. GPFS is used on many of the largest supercomputers in the world. GPFS was built on many of the ideas that were developed in the academic community ove ..."
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Cited by 518 (3 self)
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GPFS is IBM's parallel, shareddisk file system for cluster computers, available on the RS/6000 SP parallel supercomputer and on Linux clusters. GPFS is used on many of the largest supercomputers in the world. GPFS was built on many of the ideas that were developed in the academic community
A Simple, Fast, and Accurate Algorithm to Estimate Large Phylogenies by Maximum Likelihood
, 2003
"... The increase in the number of large data sets and the complexity of current probabilistic sequence evolution models necessitates fast and reliable phylogeny reconstruction methods. We describe a new approach, based on the maximumlikelihood principle, which clearly satisfies these requirements. The ..."
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Cited by 2109 (30 self)
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The increase in the number of large data sets and the complexity of current probabilistic sequence evolution models necessitates fast and reliable phylogeny reconstruction methods. We describe a new approach, based on the maximumlikelihood principle, which clearly satisfies these requirements
Pastry: Scalable, distributed object location and routing for largescale peertopeer systems
, 2001
"... This paper presents the design and evaluation of Pastry, a scalable, distributed object location and routing scheme for widearea peertopeer applications. Pastry provides applicationlevel routing and object location in a potentially very large overlay network of nodes connected via the Internet. ..."
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Cited by 2063 (50 self)
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This paper presents the design and evaluation of Pastry, a scalable, distributed object location and routing scheme for widearea peertopeer applications. Pastry provides applicationlevel routing and object location in a potentially very large overlay network of nodes connected via the Internet
From Sparse Solutions of Systems of Equations to Sparse Modeling of Signals and Images
, 2007
"... A fullrank matrix A ∈ IR n×m with n < m generates an underdetermined system of linear equations Ax = b having infinitely many solutions. Suppose we seek the sparsest solution, i.e., the one with the fewest nonzero entries: can it ever be unique? If so, when? As optimization of sparsity is combin ..."
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Cited by 423 (37 self)
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is combinatorial in nature, are there efficient methods for finding the sparsest solution? These questions have been answered positively and constructively in recent years, exposing a wide variety of surprising phenomena; in particular, the existence of easilyverifiable conditions under which optimallysparse
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