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The program dependence graph and its use in optimization
 ACM Transactions on Programming Languages and Systems
, 1987
"... In this paper we present an intermediate program representation, called the program dependence graph (PDG), that makes explicit both the data and control dependence5 for each operation in a program. Data dependences have been used to represent only the relevant data flow relationships of a program. ..."
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Cited by 989 (3 self)
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In this paper we present an intermediate program representation, called the program dependence graph (PDG), that makes explicit both the data and control dependence5 for each operation in a program. Data dependences have been used to represent only the relevant data flow relationships of a program
Community detection in graphs
, 2009
"... The modern science of networks has brought significant advances to our understanding of complex systems. One of the most relevant features of graphs representing real systems is community structure, or clustering, i. e. the organization of vertices in clusters, with many edges joining vertices of th ..."
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Cited by 801 (1 self)
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The modern science of networks has brought significant advances to our understanding of complex systems. One of the most relevant features of graphs representing real systems is community structure, or clustering, i. e. the organization of vertices in clusters, with many edges joining vertices
Using Bayesian networks to analyze expression data
 Journal of Computational Biology
, 2000
"... DNA hybridization arrays simultaneously measure the expression level for thousands of genes. These measurements provide a “snapshot ” of transcription levels within the cell. A major challenge in computational biology is to uncover, from such measurements, gene/protein interactions and key biologica ..."
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Cited by 1076 (18 self)
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biological features of cellular systems. In this paper, we propose a new framework for discovering interactions between genes based on multiple expression measurements. This framework builds on the use of Bayesian networks for representing statistical dependencies. A Bayesian network is a graphbased model
Books in graphs
, 2008
"... A set of q triangles sharing a common edge is called a book of size q. We write β (n, m) for the the maximal q such that every graph G (n, m) contains a book of size q. In this note 1) we compute β ( n, cn 2) for infinitely many values of c with 1/4 < c < 1/3, 2) we show that if m ≥ (1/4 − α) ..."
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Cited by 2380 (22 self)
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A set of q triangles sharing a common edge is called a book of size q. We write β (n, m) for the the maximal q such that every graph G (n, m) contains a book of size q. In this note 1) we compute β ( n, cn 2) for infinitely many values of c with 1/4 < c < 1/3, 2) we show that if m ≥ (1/4 − α
Factor Graphs and the SumProduct Algorithm
 IEEE TRANSACTIONS ON INFORMATION THEORY
, 1998
"... A factor graph is a bipartite graph that expresses how a "global" function of many variables factors into a product of "local" functions. Factor graphs subsume many other graphical models including Bayesian networks, Markov random fields, and Tanner graphs. Following one simple c ..."
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Cited by 1787 (72 self)
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A factor graph is a bipartite graph that expresses how a "global" function of many variables factors into a product of "local" functions. Factor graphs subsume many other graphical models including Bayesian networks, Markov random fields, and Tanner graphs. Following one simple
Interprocedural Slicing Using Dependence Graphs
 ACM TRANSACTIONS ON PROGRAMMING LANGUAGES AND SYSTEMS
, 1990
"... ... This paper concerns the problem of interprocedural slicinggenerating a slice of an entire program, where the slice crosses the boundaries of procedure calls. To solve this problem, we introduce a new kind of graph to represent programs, called a system dependence graph, which extends previou ..."
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Cited by 822 (85 self)
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... This paper concerns the problem of interprocedural slicinggenerating a slice of an entire program, where the slice crosses the boundaries of procedure calls. To solve this problem, we introduce a new kind of graph to represent programs, called a system dependence graph, which extends
Fast Planning Through Planning Graph Analysis
 ARTIFICIAL INTELLIGENCE
, 1995
"... We introduce a new approach to planning in STRIPSlike domains based on constructing and analyzing a compact structure we call a Planning Graph. We describe a new planner, Graphplan, that uses this paradigm. Graphplan always returns a shortest possible partialorder plan, or states that no valid pla ..."
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Cited by 1165 (3 self)
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We introduce a new approach to planning in STRIPSlike domains based on constructing and analyzing a compact structure we call a Planning Graph. We describe a new planner, Graphplan, that uses this paradigm. Graphplan always returns a shortest possible partialorder plan, or states that no valid
Algebraic Graph Theory
"... Algebraic graph theory comprises both the study of algebraic objects arising in connection with graphs, for example, automorphism groups of graphs along with the use of algebraic tools to establish interesting properties of combinatorial objects. One of the oldest themes in the area is the investiga ..."
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Cited by 868 (12 self)
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Algebraic graph theory comprises both the study of algebraic objects arising in connection with graphs, for example, automorphism groups of graphs along with the use of algebraic tools to establish interesting properties of combinatorial objects. One of the oldest themes in the area
Graphbased algorithms for Boolean function manipulation
 IEEE TRANSACTIONS ON COMPUTERS
, 1986
"... In this paper we present a new data structure for representing Boolean functions and an associated set of manipulation algorithms. Functions are represented by directed, acyclic graphs in a manner similar to the representations introduced by Lee [1] and Akers [2], but with further restrictions on th ..."
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Cited by 3499 (47 self)
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to the sizes of the graphs being operated on, and hence are quite efficient as long as the graphs do not grow too large. We present experimental results from applying these algorithms to problems in logic design verification that demonstrate the practicality of our approach.
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