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15,686
Graphical models, exponential families, and variational inference
, 2008
"... The formalism of probabilistic graphical models provides a unifying framework for capturing complex dependencies among random variables, and building largescale multivariate statistical models. Graphical models have become a focus of research in many statistical, computational and mathematical fiel ..."
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Cited by 800 (26 self)
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The formalism of probabilistic graphical models provides a unifying framework for capturing complex dependencies among random variables, and building largescale multivariate statistical models. Graphical models have become a focus of research in many statistical, computational and mathematical fields, including bioinformatics, communication theory, statistical physics, combinatorial optimization, signal and image processing, information retrieval and statistical machine learning. Many problems that arise in specific instances — including the key problems of computing marginals and modes of probability distributions — are best studied in the general setting. Working with exponential family representations, and exploiting the conjugate duality between the cumulant function and the entropy for exponential families, we develop general variational representations of the problems of computing likelihoods, marginal probabilities and most probable configurations. We describe how a wide varietyof algorithms — among them sumproduct, cluster variational methods, expectationpropagation, mean field methods, maxproduct and linear programming relaxation, as well as conic programming relaxations — can all be understood in terms of exact or approximate forms of these variational representations. The variational approach provides a complementary alternative to Markov chain Monte Carlo as a general source of approximation methods for inference in largescale statistical models.
Constraint Networks
, 1992
"... Constraintbased reasoning is a paradigm for formulating knowledge as a set of constraints without specifying the method by which these constraints are to be satisfied. A variety of techniques have been developed for finding partial or complete solutions for different kinds of constraint expression ..."
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Cited by 1149 (43 self)
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Constraintbased reasoning is a paradigm for formulating knowledge as a set of constraints without specifying the method by which these constraints are to be satisfied. A variety of techniques have been developed for finding partial or complete solutions for different kinds of constraint expressions. These have been successfully applied to diverse tasks such as design, diagnosis, truth maintenance, scheduling, spatiotemporal reasoning, logic programming and user interface. Constraint networks are graphical representations used to guide strategies for solving constraint satisfaction problems (CSPs).
Community detection in graphs
, 2009
"... The modern science of networks has brought significant advances to our understanding of complex systems. One of the most relevant features of graphs representing real systems is community structure, or clustering, i. e. the organization of vertices in clusters, with many edges joining vertices of th ..."
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Cited by 801 (1 self)
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The modern science of networks has brought significant advances to our understanding of complex systems. One of the most relevant features of graphs representing real systems is community structure, or clustering, i. e. the organization of vertices in clusters, with many edges joining vertices
An introduction to variational methods for graphical models
 TO APPEAR: M. I. JORDAN, (ED.), LEARNING IN GRAPHICAL MODELS
"... ..."
SemiSupervised Learning Literature Survey
, 2006
"... We review the literature on semisupervised learning, which is an area in machine learning and more generally, artificial intelligence. There has been a whole
spectrum of interesting ideas on how to learn from both labeled and unlabeled data, i.e. semisupervised learning. This document is a chapter ..."
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Cited by 757 (8 self)
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We review the literature on semisupervised learning, which is an area in machine learning and more generally, artificial intelligence. There has been a whole
spectrum of interesting ideas on how to learn from both labeled and unlabeled data, i.e. semisupervised learning. This document is a
Modeling and simulation of genetic regulatory systems: A literature review
 JOURNAL OF COMPUTATIONAL BIOLOGY
, 2002
"... In order to understand the functioning of organisms on the molecular level, we need to know which genes are expressed, when and where in the organism, and to which extent. The regulation of gene expression is achieved through genetic regulatory systems structured by networks of interactions between ..."
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Cited by 729 (15 self)
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for the modeling and simulation of genetic regulatory networks will be indispensable. This paper reviews formalisms that have been employed in mathematical biology and bioinformatics to describe genetic regulatory systems, in particular directed graphs, Bayesian networks, Boolean networks and their generalizations
Statecharts: A Visual Formalism For Complex Systems
, 1987
"... We present a broad extension of the conventional formalism of state machines and state diagrams, that is relevant to the specification and design of complex discreteevent systems, such as multicomputer realtime systems, communication protocols and digital control units. Our diagrams, which we cal ..."
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Cited by 2683 (56 self)
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We present a broad extension of the conventional formalism of state machines and state diagrams, that is relevant to the specification and design of complex discreteevent systems, such as multicomputer realtime systems, communication protocols and digital control units. Our diagrams, which we call statecharts, extend conventional statetransition diagrams with essentially three olements, dealing, respectively, with the notions of hierarchy, concurrency and communication. These transform the language of state diagrams into a highly structured' and economical description language. Statecharts are thus compact and expressivesmall diagrams can express complex behavioras well as compositional and modular. When coupled with the capabilities of computerized graphics, statecharts enable viewing the description at different levels of detail, and make even very large specifications manageable and comprehensible. In fact, we intend to demonstrate here that statecharts counter many of the objections raised against conventional state diagrams, and thus appear to render specification by diagrams an attractive and plausible approach. Statecharts can be used either as a standalone behavioral description or as part of a more general design methodology that deals also with the system's other aspects, such as functional decomposition and dataflow specification. We also discuss some practical experience that was gained over the last three years in applying the statechart formalism to the specification of a particularly complex system.
Fusion, Propagation, and Structuring in Belief Networks
 ARTIFICIAL INTELLIGENCE
, 1986
"... Belief networks are directed acyclic graphs in which the nodes represent propositions (or variables), the arcs signify direct dependencies between the linked propositions, and the strengths of these dependencies are quantified by conditional probabilities. A network of this sort can be used to repre ..."
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Cited by 482 (8 self)
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Belief networks are directed acyclic graphs in which the nodes represent propositions (or variables), the arcs signify direct dependencies between the linked propositions, and the strengths of these dependencies are quantified by conditional probabilities. A network of this sort can be used
hypergraphs
, 804
"... We show that a 2subsetregular selfcomplementary 3uniform hypergraph with n vertices exists if and only if n≥6 and n is congruent to 2 modulo 4. 1 ..."
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We show that a 2subsetregular selfcomplementary 3uniform hypergraph with n vertices exists if and only if n≥6 and n is congruent to 2 modulo 4. 1
Results 1  10
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