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NonLinear Vibrational Normal Modes of Biomolecules
"... The vibrational harmonic normal modes of a molecule, which are valid at relatively low energies close to a potential minimum, are extended by periodic orbits to higher energies where anharmonicity and coupling of the degrees of freedom set in. The families of periodic orbits which emanate from the e ..."
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localized trajectories associated with specific conformations and nonlinear vibrational modes can be traced. The influence of a solvent like water to excited nonlinear normal modes is examined. 1.
SNOPT: An SQP Algorithm For LargeScale Constrained Optimization
, 2002
"... Sequential quadratic programming (SQP) methods have proved highly effective for solving constrained optimization problems with smooth nonlinear functions in the objective and constraints. Here we consider problems with general inequality constraints (linear and nonlinear). We assume that first deriv ..."
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Cited by 582 (23 self)
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Sequential quadratic programming (SQP) methods have proved highly effective for solving constrained optimization problems with smooth nonlinear functions in the objective and constraints. Here we consider problems with general inequality constraints (linear and nonlinear). We assume that first
Bundle Adjustment  A Modern Synthesis
 VISION ALGORITHMS: THEORY AND PRACTICE, LNCS
, 2000
"... This paper is a survey of the theory and methods of photogrammetric bundle adjustment, aimed at potential implementors in the computer vision community. Bundle adjustment is the problem of refining a visual reconstruction to produce jointly optimal structure and viewing parameter estimates. Topics c ..."
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Cited by 555 (12 self)
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covered include: the choice of cost function and robustness; numerical optimization including sparse Newton methods, linearly convergent approximations, updating and recursive methods; gauge (datum) invariance; and quality control. The theory is developed for general robust cost functions rather than
A theory of memory retrieval
 PSYCHOL. REV
, 1978
"... A theory of memory retrieval is developed and is shown to apply over a range of experimental paradigms. Access to memory traces is viewed in terms of a resonance metaphor. The probe item evokes the search set on the basis of probememory item relatedness, just as a ringing tuning fork evokes sympath ..."
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Cited by 728 (81 self)
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sympathetic vibrations in other tuning forks. Evidence is accumulated in parallel from each probememory item comparison, and each comparison is modeled by a continuous random walk process. In item recognition, the decision process is selfterminating on matching comparisons and exhaustive on nonmatching
Constrained model predictive control: Stability and optimality
 AUTOMATICA
, 2000
"... Model predictive control is a form of control in which the current control action is obtained by solving, at each sampling instant, a finite horizon openloop optimal control problem, using the current state of the plant as the initial state; the optimization yields an optimal control sequence and t ..."
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Cited by 696 (15 self)
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important because efficiency demands operating points on or close to the boundary of the set of admissible states and controls. In this review, we focus on model predictive control of constrained systems, both linear and nonlinear and discuss only briefly model predictive control of unconstrained nonlinear
Convex Analysis
, 1970
"... In this book we aim to present, in a unified framework, a broad spectrum of mathematical theory that has grown in connection with the study of problems of optimization, equilibrium, control, and stability of linear and nonlinear systems. The title Variational Analysis reflects this breadth. For a lo ..."
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Cited by 5350 (67 self)
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In this book we aim to present, in a unified framework, a broad spectrum of mathematical theory that has grown in connection with the study of problems of optimization, equilibrium, control, and stability of linear and nonlinear systems. The title Variational Analysis reflects this breadth. For a
Studies of transformation of Escherichia coli with plasmids
 J. Mol. Biol
, 1983
"... Factors that affect he probability of genetic transformation f Escherichia coli by plasmids have been evaluated. A set of conditions is described under which about one in every 400 plasmid molecules produces a transformed cell. These conditions include cell growth in medium containing elevated level ..."
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Cited by 1609 (1 self)
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levels of Mg 2+. and incubation of the cells at 0 ~ in a solution of Mn 2+, ("a 2+, Rb + or K +, dimethyl sulfoxide, dithiothreitol, and hexamine cobalt (III). Transibrmation efficiency declines linearly with increasing plasmid size. Relaxed and supercoiled plasmids transfol'm with similar
A Signal Processing Approach To Fair Surface Design
, 1995
"... In this paper we describe a new tool for interactive freeform fair surface design. By generalizing classical discrete Fourier analysis to twodimensional discrete surface signals  functions defined on polyhedral surfaces of arbitrary topology , we reduce the problem of surface smoothing, or fai ..."
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Cited by 668 (15 self)
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, to accommodate different types of constraints. Some constraints can be imposed without any modification of the algorithm, while others require the solution of a small associated linear system of equations. In particular, vertex location constraints, vertex normal constraints, and surface normal discontinuities
Numerical integration of the Cartesian equations of motion of a system with constraints: molecular dynamics of nalkanes
 J. Comput. Phys
, 1977
"... A numerical algorithm integrating the 3N Cartesian equations of motion of a system of N points subject to holonomic constraints is formulated. The relations of constraint remain perfectly fulfilled at each step of the trajectory despite the approximate character of numerical integration. The method ..."
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Cited by 682 (6 self)
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model, (b) the derivation of the equations of motion of the system and (c) the choice of an efficient algorithm for the numerical integration of these equations. In polyatomic molecules, the fast internal vibrations are usually decoupled from
Evaluating the Accuracy of SamplingBased Approaches to the Calculation of Posterior Moments
 IN BAYESIAN STATISTICS
, 1992
"... Data augmentation and Gibbs sampling are two closely related, samplingbased approaches to the calculation of posterior moments. The fact that each produces a sample whose constituents are neither independent nor identically distributed complicates the assessment of convergence and numerical accurac ..."
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Cited by 583 (14 self)
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accuracy of the approximations to the expected value of functions of interest under the posterior. In this paper methods from spectral analysis are used to evaluate numerical accuracy formally and construct diagnostics for convergence. These methods are illustrated in the normal linear model
Results 1  10
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