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Results 1 - 8 of 8

Negatome 2.0: a database of non-interacting proteins

by Goar Frishman, Pawel Smialowski, Florian Goebels, Benedikt Wachinger, Dmitrij Frishman , 2013
"... derived by literature mining, manual annotation and protein structure analysis ..."
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derived by literature mining, manual annotation and protein structure analysis

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by Goar Frishman, Smialowski Pawel, Technische Universität München, Goar Frishman, Pawel Smialowski, Florian Goebels, Benedikt Wachinger, Dmitrij Frishman , 2013
"... Negatome 2.0: A database of non-interacting proteins derived by literature mining, manual annotation and protein structure analysis ..."
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Negatome 2.0: A database of non-interacting proteins derived by literature mining, manual annotation and protein structure analysis

synthase and

by Laura Strittmatter, Yang Li, Nathan J. Nakatsuka, Sarah E. Calvo, Zenon Grabarek, Vamsi K. Mootha , 2013
"... is a polymorphic human enzyme with malate ..."
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is a polymorphic human enzyme with malate

unknown title

by Laura Strittmatter, Yang Li, Nathan Nakatsuka, Sarah Calvo
"... CLYBL is a polymorphic human enzyme with malate synthase and -methylmalate synthase activity ..."
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CLYBL is a polymorphic human enzyme with malate synthase and -methylmalate synthase activity

Computational Tools for Protein-DNA Interactions How Many Binding Proteins Exist?

by Christopher Kauffman , George Karypis
"... Abstract Interactions between DNA and proteins are central to living systems, and characterizing how and when they occur would greatly enhance our understanding of working genomes. We review the different computational problems associated with protein-DNA interactions and the various methods used t ..."
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) identification of transcription factor binding sites, and (3) identification of DNA-binding proteins. How Many Binding Proteins Exist? Accounts of how many DNA-binding proteins exist vary through the literature. Attention is particularly focused on transcription factors. Older sources estimated that 2-3% of a

Annotating Enzymes of Uncertain Function: The Deacylation of D-Amino Acids by Members of the Amidohydrolase Superfamily †, ‡

by Jennifer A Cummings , Alexander A Fedorov , Chengfu Xu , Shoshana Brown , ^elena Fedorov , Patricia C Babbitt , Steven C Almo , Frank M Raushel
"... ABSTRACT: The catalytic activities of three members of the amidohydrolase superfamily were discovered using amino acid substrate libraries. Bb3285 from Bordetella bronchiseptica, Gox1177 from Gluconobacter oxidans, and Sco4986 from Streptomyces coelicolor are currently annotated as D-aminoacylases ..."
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) and 9-fluoromethyl chloroformate. The derivatized amino acids were separated on a 5 μm reverse phase HPLC column (Agilent 79916AA-572) using a gradient from 100% buffer A [20 mM sodium acetate, 0.018% (v/v) TEA, 50 mM ethylenediamine, and 0.3% (v/v) THF (pH 7.2)] to 60% buffer B (1/2/2 100 mM sodium

The past, present, and future of immune repertoire biology—the rise of next-generation repertoire analysis. Front Immunol 4

by Adrien Six , Maria Encarnita Mariotti-Ferrandiz , Wahiba Chaara , Susana Magadan , Hang-Phuong Pham , Marie-Paule Lefranc , Thierry Mora , Véronique Thomas-Vaslin , Aleksandra M Walczak , Pierre Boudinot , Koji Yasutomo , 2013
"... T and B cell repertoires are collections of lymphocytes, each characterized by its antigenspecific receptor. We review here classical technologies and analysis strategies developed to assess immunoglobulin (IG) and T cell receptor (TR) repertoire diversity, and describe recent advances in the field ..."
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and make them available for interactive meta-analysis. This necessitates more than the simple juxtaposition of annotated raw data but rather requires (1) the codification and standardization of this multi-level data and (2) the integration of complexity science into immunology. Along this line, recent

Animal board invited review: advances in proteomics for animal and food sciences Animal board invited review: advances in proteomics for animal and food sciences animal

by A M Almeida , A Bassols , E Bendixen , M Bhide , F Ceciliani , Susana Cristobal , P D Eckersall , K Hollung , F Lisacek , G Mazzucchelli , M Mclaughlin , I Miller , J E Nally , J Plowman , J Renaut , P Rodrigues , P Roncada , J Staric , R Turk , A M Almeida , A Bassols , E Bendixen , M Bhide , F Ceciliani , Susana Cristobal , P D Eckersall , K Hollung , F Lisacek , G Mazzucchelli , M Mclaughlin , I Miller , J E Nally , J Plowman , J Renaut , P Rodrigues , P Roncada , J Staric , R Turk , A M Almeida , A Bassols , E Bendixen , M Bhide , F Ceciliani , S Cristobal , P D Eckersall , † , K Hollung , F Lisacek , G Mazzucchelli , M Mclaughlin , I Miller , J E Nally , J Plowman , J Renaut , P Rodrigues , P Roncada , J Staric , R Turk
"... Animal production and health (APH) is an important sector in the world economy, representing a large proportion of the budget of all member states in the European Union and in other continents. APH is a highly competitive sector with a strong emphasis on innovation and, albeit with country to count ..."
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community, is still an almost unexplored frontier to conquer in animal science. Metaproteomic analysis could provide identification and relative quantification of protein and protein families recovered directly from environmental samples or from a concrete ecosystem. This methodological approach aims
Results 1 - 8 of 8
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