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Database resources of the National Center for Biotechnology Information

by David L. Wheeler, Tanya Barrett, Dennis A. Benson, Stephen H. Bryant, Kathi Canese, Vyacheslav Chetvernin, Deanna M. Church, Michael Dicuccio, Ron Edgar, Scott Federhen, Lewis Y. Geer, Yuri Kapustin, Oleg Khovayko, David L, David J. Lipman, Thomas L. Madden, Donna R. Maglott, James Ostell, Vadim Miller, Kim D. Pruitt, Gregory D. Schuler, Edwin Sequeira, Steven T. Sherry, Karl Sirotkin, Re Souvorov, Grigory Starchenko, Roman L. Tatusov, Tatiana A. Tatusova, Lukas Wagner, Eugene Yaschenko - Nucleic Acids Res , 2008
"... In addition to maintaining the GenBankÒ nucleic acid sequence database, the National Center for Biotechnology Information (NCBI) provides analysis and retrieval resources for the data in GenBank and other biological data made available through NCBI’s Web site. NCBI resources include Entrez, ..."
Abstract - Cited by 964 (15 self) - Add to MetaCart
In addition to maintaining the GenBankÒ nucleic acid sequence database, the National Center for Biotechnology Information (NCBI) provides analysis and retrieval resources for the data in GenBank and other biological data made available through NCBI’s Web site. NCBI resources include Entrez,

Phylogenetic identification and in situ detection of individual microbial cells without cultivation. Microbiol. Rev

by R I Amann, W Ludwig, K H Schleifer, Rudolf I. Amann, Wolfgang Ludwig, Karl-heinz Schleifer , 1995
"... cultivation.of individual microbial cells without Phylogenetic identification and in situ detection ..."
Abstract - Cited by 1070 (29 self) - Add to MetaCart
cultivation.of individual microbial cells without Phylogenetic identification and in situ detection

Modeling and simulation of genetic regulatory systems: A literature review

by Hidde De Jong - JOURNAL OF COMPUTATIONAL BIOLOGY , 2002
"... In order to understand the functioning of organisms on the molecular level, we need to know which genes are expressed, when and where in the organism, and to which extent. The regulation of gene expression is achieved through genetic regulatory systems structured by networks of interactions between ..."
Abstract - Cited by 729 (15 self) - Add to MetaCart
DNA, RNA, proteins, and small molecules. As most genetic regulatory networks of interest involve many components connected through interlocking positive and negative feedback loops, an intuitive understanding of their dynamics is hard to obtain. As a consequence, formal methods and computer tools

Alternative isoform regulation in human tissue transcriptomes

by Eric T. Wang, Rickard S, Shujun Luo, Irina Khrebtukova, Lu Zhang, Christine Mayr, Stephen F. Kingsmore, Gary P. Schroth, Christopher B. Burge - Nature , 2008
"... Through alternative processing of pre-mRNAs, individual mammalian genes often produce multiple mRNA and protein isoforms that may have related, distinct or even opposing functions. Here we report an in-depth analysis of 15 diverse human tissue and cell line transcriptomes based on deep sequencing of ..."
Abstract - Cited by 525 (4 self) - Add to MetaCart
Through alternative processing of pre-mRNAs, individual mammalian genes often produce multiple mRNA and protein isoforms that may have related, distinct or even opposing functions. Here we report an in-depth analysis of 15 diverse human tissue and cell line transcriptomes based on deep sequencing

Construction of Escherichia coli K-12 in-frame, single-gene knockout mutants: the Keio collection. Mol. Syst. Biol 2:2006.0008

by Tomoya Baba, Takeshi Ara, Miki Hasegawa, Yuki Takai, Yoshiko Okumura, Miki Baba, Kirill A Datsenko, Masaru Tomita, Barry L Wanner, Hirotada Mori , 2006
"... We have systematically made a set of precisely defined, single-gene deletions of all nonessential genes in Escherichia coli K-12. Open-reading frame coding regions were replaced with a kanamycin cassette flanked by FLP recognition target sites by using a one-step method for inactivation of chromosom ..."
Abstract - Cited by 701 (7 self) - Add to MetaCart
collection’—provide a new resource not only for systematic analyses of unknown gene functions and gene regulatory networks but also for genome-wide testing of mutational effects in a common strain background, E. coli K-12 BW25113. We were unable to disrupt 303 genes, including 37 of unknown function, which

TRANSFAC and its module TRANSCompel: transcriptional gene regulation in eukaryotes

by V. Matys, O. V. Kel-margoulis, E. Fricke, I. Liebich, A. Barre-dirrie, I. Reuter, D. Chekmenev, M. Krull, K. Hornischer, N. Voss, P. Stegmaier, B. Lewicki-potapov, H. Saxel, A. E. Kel, E. Wingender - Nucleic Acids Res , 2006
"... The TRANSFAC database on transcription factors, their binding sites, nucleotide distribution matrices and regulated genes as well as the complementing database TRANSCompel on composite elements have been further enhanced on various levels. A new web interface with different search options and inte ..."
Abstract - Cited by 475 (5 self) - Add to MetaCart
The TRANSFAC database on transcription factors, their binding sites, nucleotide distribution matrices and regulated genes as well as the complementing database TRANSCompel on composite elements have been further enhanced on various levels. A new web interface with different search options

Power-law distributions in empirical data

by Aaron Clauset, Cosma Rohilla Shalizi, M. E. J. Newman - ISSN 00361445. doi: 10.1137/ 070710111. URL http://dx.doi.org/10.1137/070710111 , 2009
"... Power-law distributions occur in many situations of scientific interest and have significant consequences for our understanding of natural and man-made phenomena. Unfortunately, the empirical detection and characterization of power laws is made difficult by the large fluctuations that occur in the t ..."
Abstract - Cited by 589 (7 self) - Add to MetaCart
Power-law distributions occur in many situations of scientific interest and have significant consequences for our understanding of natural and man-made phenomena. Unfortunately, the empirical detection and characterization of power laws is made difficult by the large fluctuations that occur

Genomic Expression Programs in the Response of Yeast Cells to Environmental Changes

by Audrey P. Gasch, Paul T. Spellman, Camilla M. Kao, Orna Carmel-Harel, Michael B. Eisen, Gisela Storz, David Botstein, Patrick O. Brown, Pamela A. Silver - Mol. Biol. Cell , 2000
"... this article contains data set material, and is available at www.molbiolcell.org. ..."
Abstract - Cited by 743 (21 self) - Add to MetaCart
this article contains data set material, and is available at www.molbiolcell.org.

Planning Algorithms

by Steven M LaValle , 2004
"... This book presents a unified treatment of many different kinds of planning algorithms. The subject lies at the crossroads between robotics, control theory, artificial intelligence, algorithms, and computer graphics. The particular subjects covered include motion planning, discrete planning, planning ..."
Abstract - Cited by 1108 (51 self) - Add to MetaCart
This book presents a unified treatment of many different kinds of planning algorithms. The subject lies at the crossroads between robotics, control theory, artificial intelligence, algorithms, and computer graphics. The particular subjects covered include motion planning, discrete planning

Insertion sequences

by Jacques Mahillon, Michael Ch, Jacques Mahillon, Michael Chandler - Microbiol Mol. Biol. Rev , 1998
"... These include: Receive: RSS Feeds, eTOCs, free email alerts (when new articles cite this article), more» Downloaded from ..."
Abstract - Cited by 426 (3 self) - Add to MetaCart
These include: Receive: RSS Feeds, eTOCs, free email alerts (when new articles cite this article), more» Downloaded from
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