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Automatically parcellating the human cerebral cortex.

by Bruce Fischl , André Van Der Kouwe , Christophe Destrieux , Eric Halgren , Florent Ségonne , David H Salat , Evelina Busa , Larry J Seidman , Jill Goldstein , David Kennedy , Verne Caviness , Nikos Makris , Bruce Rosen , Anders M Dale , Bruce Fischl - Cereb. Cortex , 2004
"... Abstract -We present a technique for automatically assigning a neuroanatomical label to each location on a cortical surface model based on probabilistic information estimated from Introduction Techniques for labeling geometric features of the cerebral cortex are useful for analyzing a variety of fu ..."
Abstract - Cited by 189 (14 self) - Add to MetaCart
of functional and structural neuroimaging data Unfortunately, despite their potential utility, cortical parcellations are not commonly used in the neuroimaging community due to the difficult and time-consuming nature of the task of manually parcellating the entire cortex from high-resolution MRI images. While

Three-dimensional MRI atlas of the human cerebellum in proportional stereotaxic space. NeuroImage 10

by Jeremy D. Schmahmann, Julien Doyon, David Mcdonald, Colin Holmes, Karyne Lavoie, Amy S. Hurwitz, Noor Kabani, Arthur Toga, Alan Evans, Michael Petrides , 1999
"... We have prepared an atlas of the human cerebellum using high-resolution magnetic resonance-derived images warped into the proportional stereotaxic space of Talairach and Tournoux. Software that permits simultaneous visualization of the three cardinal planes facilitated the identification of the cere ..."
Abstract - Cited by 81 (4 self) - Add to MetaCart
We have prepared an atlas of the human cerebellum using high-resolution magnetic resonance-derived images warped into the proportional stereotaxic space of Talairach and Tournoux. Software that permits simultaneous visualization of the three cardinal planes facilitated the identification

A three-dimensional MRI atlas of the mouse brain with estimates of the average and variability

by J. T. Henderson, E. Chan, N. Lifshitz, J. Bishop, A. C. Evans, R. M. Henkelman, X. J. Chen - Cereb. Cortex , 2004
"... Although there is growing interest in finding mouse models of human disease, no technique for quickly and quantitatively determining anatomical mutants currently exists. Magnetic resonance imaging (MRI) is ideally suited to probe fine structures in mice. This technology is three-dimensional, non-des ..."
Abstract - Cited by 46 (8 self) - Add to MetaCart
Although there is growing interest in finding mouse models of human disease, no technique for quickly and quantitatively determining anatomical mutants currently exists. Magnetic resonance imaging (MRI) is ideally suited to probe fine structures in mice. This technology is three-dimensional, non

A three-dimensional, histological and deformable atlas of the human basal ganglia. I. Atlas construction based on immunohistochemical and MRI data

by Eric Bardinet, Didier Dormont, Grégoire Malandain, Yves Agid , et al. , 2007
"... ..."
Abstract - Cited by 12 (1 self) - Add to MetaCart
Abstract not found

MRI-based attenuation correction for PET/MRI: a novel approach combining pattern recognition and Atlas registration

by Matthias Hofmann, Florian Steinke, Verena Scheel, Guillaume Charpiat, Jason Farquhar, Philip Aschoff, Michael Brady, Bernd J. Pichler - J Nucl Med 2008;49:1875–83. Stout & Zaidi272 Author's personal copy
"... For quantitative PET information, correction of tissue photon at-tenuation ismandatory. Generally in conventional PET, the atten-uation map is obtained from a transmission scan, which uses a rotating radionuclide source, or from the CT scan in a combined PET/CT scanner. In the case of PET/MRI scanne ..."
Abstract - Cited by 10 (0 self) - Add to MetaCart
/CT scanner. Results: For human brain scans, we show on a database of 17 MR/CT image pairs that our method reliably enables estimation of a pseudo-CT image from the MR image alone. On additional datasets of MRI/PET/ CT triplets of human brain scans, we compare MRI-based at-tenuation correction with CT

Open Access Atlas-Guided Segmentation of Vervet Monkey Brain MRI

by Andriy Fedorov, Xiaoxing Li, Kilian M. Pohl, Sylvain Bouix, Martin Styner, Merideth Addi, Chris Wyatt, James B. Daunais, William M. Wells, Ron Kikinis
"... Abstract: The vervet monkey is an important nonhuman primate model that allows the study of isolated environmental factors in a controlled environment. Analysis of monkey MRI often suffers from lower quality images compared with human MRI because clinical equipment is typically used to image the sma ..."
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Abstract: The vervet monkey is an important nonhuman primate model that allows the study of isolated environmental factors in a controlled environment. Analysis of monkey MRI often suffers from lower quality images compared with human MRI because clinical equipment is typically used to image

Functional imaging with low resolution brain electromagnetic tomography (LORETA): a review.

by R D Pascual-Marqui , M Esslen , K Kochi , D Lehmann , R D Pascual-Marqui , M Esslen , K Kochi , D Lehmann , Roberto D Pascual-Marqui - Methods & Findings in Experimental & Clinical Pharmacology , 2002
"... Abstract This paper reviews several recent publications that have successfully used the functional brain imaging method known as LORETA. Emphasis is placed on the electrophysiological and neuroanatomical basis of the method, on the localization properties of the method, and on the validation of the ..."
Abstract - Cited by 99 (1 self) - Add to MetaCart
of the method in real experimental human data. Papers that criticize LORETA are briefly discussed. LORETA publications in the 1994-1997 period based localization inference on images of raw electric neuronal activity. In 1998 a series of papers appeared that based localization inference on the statistical

Probabilistic MRI Brain Anatomical Atlases Based on 1,000 Chinese Subjects

by Wang Xing, Chen Nan, Zuo Zhentao, Xue Rong, Jing Luo, Yan Zhuo, Shen Dinggang, Li Kuncheng , 2012
"... Brain atlases are designed to provide a standard reference coordinate system of the brain for neuroscience research. Existing human brain atlases are widely used to provide anatomical references and information regarding structural characteristics of the brain. The majority of them, however, are der ..."
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Brain atlases are designed to provide a standard reference coordinate system of the brain for neuroscience research. Existing human brain atlases are widely used to provide anatomical references and information regarding structural characteristics of the brain. The majority of them, however

Automatic Skull-stripping of Rat MRI/DTI Scans and Atlas Building

by Ipek Oguza, Joohwi Leeb, Francois Budina, Ashley Rumplea, Matthew Mcmurraya, Fulton Crewsc, Josephine Johnsa, Martin Stynera
"... 3D Magnetic Resonance (MR) and Diffusion Tensor Imaging (DTI) have become important noninvasive tools for the study of animal models of brain development and neuropathologies. Fully automated analysis methods adapted to rodent scale for these images will allow high-throughput studies. A fundamental ..."
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first step for most quantitative analysis algorithms is skull-stripping, which refers to the segmentation of the image into two tissue categories, brain and non-brain. In this manuscript, we present a fully automatic skull-stripping algorithm in an atlas-based manner. We also demonstrate how to either

Volumetric parcellation methodology of the human hypothalamus in neuroimaging: Normative data and sex differences

by Nikos Makris , Dick F Swaab , Andre Van Der Kouwe , Brandon Abbs , Denise Boriel , Robert J Handa , Stuart Tobet , Jill M Goldstein - NeuroImage , 2013
"... There is increasing evidence regarding the importance of the hypothalamus for understanding sex differences in relation to neurological, psychiatric, endocrine and sleep disorders. Although different in histology, physiology, connections and function, multiple hypothalamic nuclei subserve non-volun ..."
Abstract - Cited by 1 (0 self) - Add to MetaCart
, volume, connectivity, and function of hypothalamic regions represented at the level of its nuclei. The goals of the present study were to develop a novel method of semi-automated volumetric parcellation for the human hypothalamus that could be used to investigate clinical conditions using MRI
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