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A high-performance, portable implementation of the MPI message passing interface standard

by Ewing Lusk, Nathan Doss, Anthony Skjellum - Parallel Computing , 1996
"... MPI (Message Passing Interface) is a specification for a standard library for message passing that was defined by the MPI Forum, a broadly based group of parallel computer vendors, library writers, and applications specialists. Multiple implementations of MPI have been developed. In this paper, we d ..."
Abstract - Cited by 888 (67 self) - Add to MetaCart
MPI (Message Passing Interface) is a specification for a standard library for message passing that was defined by the MPI Forum, a broadly based group of parallel computer vendors, library writers, and applications specialists. Multiple implementations of MPI have been developed. In this paper, we

GPFS: A Shared-Disk File System for Large Computing Clusters

by Frank Schmuck, Roger Haskin - In Proceedings of the 2002 Conference on File and Storage Technologies (FAST , 2002
"... GPFS is IBM's parallel, shared-disk file system for cluster computers, available on the RS/6000 SP parallel supercomputer and on Linux clusters. GPFS is used on many of the largest supercomputers in the world. GPFS was built on many of the ideas that were developed in the academic community ove ..."
Abstract - Cited by 518 (3 self) - Add to MetaCart
GPFS is IBM's parallel, shared-disk file system for cluster computers, available on the RS/6000 SP parallel supercomputer and on Linux clusters. GPFS is used on many of the largest supercomputers in the world. GPFS was built on many of the ideas that were developed in the academic community

Dryad: Distributed Data-Parallel Programs from Sequential Building Blocks

by Michael Isard, Mihai Budiu, Yuan Yu, Andrew Birrell, Dennis Fetterly - In EuroSys , 2007
"... Dryad is a general-purpose distributed execution engine for coarse-grain data-parallel applications. A Dryad applica-tion combines computational “vertices ” with communica-tion “channels ” to form a dataflow graph. Dryad runs the application by executing the vertices of this graph on a set of availa ..."
Abstract - Cited by 730 (27 self) - Add to MetaCart
of available computers, communicating as appropriate through files, TCP pipes, and shared-memory FIFOs. The vertices provided by the application developer are quite simple and are usually written as sequential programs with no thread creation or locking. Concurrency arises from Dryad scheduling vertices to run

Scatter/Gather: A Cluster-based Approach to Browsing Large Document Collections

by Douglass R. Cutting, David R. Karger, Jan O. Pedersen, John W. Tukey , 1992
"... Document clustering has not been well received as an information retrieval tool. Objections to its use fall into two main categories: first, that clustering is too slow for large corpora (with running time often quadratic in the number of documents); and second, that clustering does not appreciably ..."
Abstract - Cited by 772 (12 self) - Add to MetaCart
Document clustering has not been well received as an information retrieval tool. Objections to its use fall into two main categories: first, that clustering is too slow for large corpora (with running time often quadratic in the number of documents); and second, that clustering does not appreciably

MPI: A Message-Passing Interface Standard

by Message Passing Interface Forum , 1994
"... process naming to allow libraries to describe their communication in terms suitable to their own data structures and algorithms, ffl The ability to "adorn" a set of communicating processes with additional user-defined attributes, such as extra collective operations. This mechanism should ..."
Abstract - Cited by 402 (0 self) - Add to MetaCart
6 7 8 9 10 11 12 13 14 15 16 17 18 19 20 21 22 23 24 25 26 27 28 29 30 31 32 33 34 35 36 37 38 39 40 41 42 43 44 45 46 47 5.1. INTRODUCTION 131 5.1.2 MPI's Support for Libraries The corresponding concepts that MPI provides, specifically to support robust libraries, are as follows: ffl

Community detection in graphs

by Santo Fortunato , 2009
"... The modern science of networks has brought significant advances to our understanding of complex systems. One of the most relevant features of graphs representing real systems is community structure, or clustering, i. e. the organization of vertices in clusters, with many edges joining vertices of th ..."
Abstract - Cited by 801 (1 self) - Add to MetaCart
The modern science of networks has brought significant advances to our understanding of complex systems. One of the most relevant features of graphs representing real systems is community structure, or clustering, i. e. the organization of vertices in clusters, with many edges joining vertices

Adaptive Scheduling under Memory Constraints on Non-Dedicated Computational Farms

by Dimitrios S. Nikolopoulos, Constantine D. Polychronopoulos - Future Generation Computer Systems , 2003
"... This paper presents scheduler extensions that enable better adaptation of parallel programs to the execution conditions of non-dedicated computational farms with limited memory resources. The purpose of the techniques is to prevent thrashing and co-schedule communicating threads, using two disjoint, ..."
Abstract - Cited by 6 (0 self) - Add to MetaCart
This paper presents scheduler extensions that enable better adaptation of parallel programs to the execution conditions of non-dedicated computational farms with limited memory resources. The purpose of the techniques is to prevent thrashing and co-schedule communicating threads, using two disjoint

Live Migration of Virtual Machines

by Christopher Clark, Keir Fraser, Steven H, Jakob Gorm Hansen, Eric Jul, Christian Limpach, Ian Pratt, Andrew Warfield - In Proceedings of the 2nd ACM/USENIX Symposium on Networked Systems Design and Implementation (NSDI , 2005
"... Migrating operating system instances across distinct physical hosts is a useful tool for administrators of data centers and clusters: It allows a clean separation between hardware and software, and facilitates fault management, load balancing, and low-level system maintenance. By carrying out the ma ..."
Abstract - Cited by 613 (14 self) - Add to MetaCart
Migrating operating system instances across distinct physical hosts is a useful tool for administrators of data centers and clusters: It allows a clean separation between hardware and software, and facilitates fault management, load balancing, and low-level system maintenance. By carrying out

The SWISS-MODEL Workspace: A web-based environment for protein structure homology modelling

by Konstantin Arnold, Lorenza Bordoli, Torsten Schwede, et al. - BIOINFORMATICS , 2005
"... Motivation: Homology models of proteins are of great interest for planning and analyzing biological experiments when no experimental three-dimensional structures are available. Building homology models requires specialized programs and up-to-date sequence and structural databases. Integrating all re ..."
Abstract - Cited by 555 (5 self) - Add to MetaCart
Motivation: Homology models of proteins are of great interest for planning and analyzing biological experiments when no experimental three-dimensional structures are available. Building homology models requires specialized programs and up-to-date sequence and structural databases. Integrating all

U-Net: A User-Level Network Interface for Parallel and Distributed Computing

by Thorsten Von Eicken, Anindya Basu, Vineet Buch, Werner Vogels - In Fifteenth ACM Symposium on Operating System Principles , 1995
"... The U-Net communication architecture provides processes with a virtual view of a network interface to enable userlevel access to high-speed communication devices. The architecture, implemented on standard workstations using offthe-shelf ATM communication hardware, removes the kernel from the communi ..."
Abstract - Cited by 596 (17 self) - Add to MetaCart
, as well as novel abstractions like Active Messages can be implemented efficiently. A U-Net prototype on an 8-node ATM cluster of standard workstations offers 65 microseconds round-trip latency and 15 Mbytes/sec bandwidth. It achieves TCP performance at maximum network bandwidth and demonstrates
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