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225,210
Exact Sampling with Coupled Markov Chains and Applications to Statistical Mechanics
, 1996
"... For many applications it is useful to sample from a finite set of objects in accordance with some particular distribution. One approach is to run an ergodic (i.e., irreducible aperiodic) Markov chain whose stationary distribution is the desired distribution on this set; after the Markov chain has ..."
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Cited by 548 (13 self)
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has run for M steps, with M sufficiently large, the distribution governing the state of the chain approximates the desired distribution. Unfortunately it can be difficult to determine how large M needs to be. We describe a simple variant of this method that determines on its own when to stop
Abduction in Logic Programming
"... Abduction in Logic Programming started in the late 80s, early 90s, in an attempt to extend logic programming into a framework suitable for a variety of problems in Artificial Intelligence and other areas of Computer Science. This paper aims to chart out the main developments of the field over th ..."
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Cited by 616 (76 self)
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Abduction in Logic Programming started in the late 80s, early 90s, in an attempt to extend logic programming into a framework suitable for a variety of problems in Artificial Intelligence and other areas of Computer Science. This paper aims to chart out the main developments of the field over
Graphical models, exponential families, and variational inference
, 2008
"... The formalism of probabilistic graphical models provides a unifying framework for capturing complex dependencies among random variables, and building large-scale multivariate statistical models. Graphical models have become a focus of research in many statistical, computational and mathematical fiel ..."
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Cited by 800 (26 self)
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all be understood in terms of exact or approximate forms of these variational representations. The variational approach provides a complementary alternative to Markov chain Monte Carlo as a general source of approximation methods for inference in large-scale statistical models.
Tandem repeats finder: a program to analyze DNA sequences
, 1999
"... A tandem repeat in DNA is two or more contiguous, approximate copies of a pattern of nucleotides. Tandem repeats have been shown to cause human disease, may play a variety of regulatory and evolutionary roles and are important laboratory and analytic tools. Extensive knowledge about pattern size, co ..."
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Cited by 946 (9 self)
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, copy number, mutational history, etc. for tandem repeats has been limited by the inability to easily detect them in genomic sequence data. In this paper, we present a new algorithm for finding tandem repeats which works without the need to specify either the pattern or pattern size. We model tandem
SEAD: Secure Efficient Distance Vector Routing for Mobile Wireless Ad Hoc Networks
, 2003
"... An ad hoc network is a collection of wireless computers (nodes), communicating among themselves over possibly multihop paths, without the help of any infrastructure such as base stations or access points. Although many previous ad hoc network routing protocols have been based in part on distance vec ..."
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Cited by 522 (8 self)
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vector approaches, they have generally assumed a trusted environment. In this paper, we design and evaluate the Secure Efficient Ad hoc Distance vector routing protocol (SEAD), a secure ad hoc network routing protocol based on the design of the Destination-Sequenced Distance-Vector routing protocol
Fast Folding and Comparison of RNA Secondary Structures (The Vienna RNA Package)
"... Computer codes for computation and comparison of RNA secondary structures, the Vienna RNA package, are presented, that are based on dynamic programming algorithms and aim at predictions of structures with minimum free energies as well as at computations of the equilibrium partition functions and bas ..."
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Cited by 812 (119 self)
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Computer codes for computation and comparison of RNA secondary structures, the Vienna RNA package, are presented, that are based on dynamic programming algorithms and aim at predictions of structures with minimum free energies as well as at computations of the equilibrium partition functions
Results 1 - 10
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225,210
