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Global analyses of sea surface temperature, sea ice, and night marine air temperature since the late Nineteenth Century

by N. A. Rayner, D. E. Parker, E. B. Horton, C. K. Folland, L. V. Alexander, D. P. Rowell, E. C. Kent, A. Kaplan - J. GEOPHYSICAL RESEARCH , 2003
"... ... data set, HadISST1, and the nighttime marine air temperature (NMAT) data set, HadMAT1. HadISST1 replaces the global sea ice and sea surface temperature (GISST) data sets and is a unique combination of monthly globally complete fields of SST and sea ice concentration on a 1 ° latitude-longitude g ..."
Abstract - Cited by 539 (4 self) - Add to MetaCart
in the Arctic and for algorithm deficiencies in the Antarctic and by making the historical in situ concentrations consistent with the satellite data. SSTs near sea ice are estimated using statistical relationships between SST and sea ice concentration. HadISST1 compares well with other published analyses

Exploration, normalization, and summaries of high density oligonucleotide array probe level data.

by Rafael A Irizarry , Bridget Hobbs , Francois Collin , Yasmin D Beazer-Barclay , Kristen J Antonellis , Uwe Scherf , Terence P Speed - Biostatistics, , 2003
"... SUMMARY In this paper we report exploratory analyses of high-density oligonucleotide array data from the Affymetrix GeneChip R system with the objective of improving upon currently used measures of gene expression. Our analyses make use of three data sets: a small experimental study consisting of f ..."
Abstract - Cited by 854 (33 self) - Add to MetaCart
SUMMARY In this paper we report exploratory analyses of high-density oligonucleotide array data from the Affymetrix GeneChip R system with the objective of improving upon currently used measures of gene expression. Our analyses make use of three data sets: a small experimental study consisting

Support Vector Machine Classification and Validation of Cancer Tissue Samples Using Microarray Expression Data

by Terrence S. Furey, Nello Cristianini, Nigel Duffy, David W. Bednarski, Michèl Schummer, David Haussler , 2000
"... Motivation: DNA microarray experiments generating thousands of gene expression measurements, are being used to gather information from tissue and cell samples regarding gene expression differences that will be useful in diagnosing disease. We have developed a new method to analyse this kind of data ..."
Abstract - Cited by 569 (1 self) - Add to MetaCart
Motivation: DNA microarray experiments generating thousands of gene expression measurements, are being used to gather information from tissue and cell samples regarding gene expression differences that will be useful in diagnosing disease. We have developed a new method to analyse this kind of data

AFNI: software for analysis and visualization of functional magnetic resonance neuroimages

by Robert W Cox - Computers and Biomedical Research , 1996
"... email rwcoxmcwedu A package of computer programs for analysis and visualization of threedimensional human brain functional magnetic resonance imaging FMRI results is described The software can color overlay neural activation maps onto higher resolution anatomical scans Slices in each cardinal pl ..."
Abstract - Cited by 807 (3 self) - Add to MetaCart
plane can be viewed simultaneously Manual placement of markers on anatom ical landmarks allows transformation of anatomical and functional scans into stereotaxic TalairachTournoux coordinates The techniques for automatically generating transformed functional data sets from manually labeled anatomical

MEGA5: Molecular evolutionary genetics analysis using maximum . . .

by Koichiro Tamura, Daniel Peterson, Nicholas Peterson, Glen Stecher, Masatoshi Nei, Sudhir Kumar , 2011
"... Comparative analysis of molecular sequence data is essential for reconstructing the evolutionary histories of species and inferring the nature and extent of selective forces shaping the evolution of genes and species. Here, we announce the release of Molecular Evolutionary Genetics Analysis version ..."
Abstract - Cited by 7284 (25 self) - Add to MetaCart
Comparative analysis of molecular sequence data is essential for reconstructing the evolutionary histories of species and inferring the nature and extent of selective forces shaping the evolution of genes and species. Here, we announce the release of Molecular Evolutionary Genetics Analysis version

Fast and accurate short read alignment with Burrows-Wheeler transform

by Heng Li, Richard Durbin - BIOINFORMATICS, 2009, ADVANCE ACCESS , 2009
"... Motivation: The enormous amount of short reads generated by the new DNA sequencing technologies call for the development of fast and accurate read alignment programs. A first generation of hashtable based methods has been developed, including MAQ, which is accurate, feature rich and fast enough to a ..."
Abstract - Cited by 2096 (24 self) - Add to MetaCart
reads, e.g. from Illumina sequencing machines, and color space reads from AB SOLiD machines. Evaluations on both simulated and real data suggest that BWA is ∼10–20X faster than MAQ while achieving similar accuracy. In addition, BWA outputs alignment in the new standard SAM format. Variant calling

Understanding Normal and Impaired Word Reading: Computational Principles in Quasi-Regular Domains

by David C. Plaut , James L. McClelland, Mark S. Seidenberg, Karalyn Patterson - PSYCHOLOGICAL REVIEW , 1996
"... We develop a connectionist approach to processing in quasi-regular domains, as exemplified by English word reading. A consideration of the shortcomings of a previous implementation (Seidenberg & McClelland, 1989, Psych. Rev.) in reading nonwords leads to the development of orthographic and phono ..."
Abstract - Cited by 613 (94 self) - Add to MetaCart
in subsequent simulations, including an attractor network that reproduces the naming latency data directly in its time to settle on a response. Further analyses of the network's ability to reproduce data on impaired reading in surface dyslexia support a view of the reading system that incorporates a graded

Paml 4: Phylogenetic analysis by maximum likelihood

by Ziheng Yang - Mol. Biol. Evol , 2007
"... PAML, currently in version 4, is a package of programs for phylogenetic analyses of DNA and protein sequences using maximum likelihood (ML). The programs may be used to compare and test phylogenetic trees, but their main strengths lie in the rich repertoire of evolutionary models implemented, which ..."
Abstract - Cited by 1201 (28 self) - Add to MetaCart
phylogenetic comparison of protein-coding genes, reconstruction of ancestral genes and proteins for molecular restoration studies of extinct life forms, combined analysis of heterogeneous data sets from multiple gene loci, and estimation of species divergence times incorporating uncertainties in fossil

Motivational and self-regulated learning components of classroom academic performance

by Paul R. Pintrich, Elisabeth V. De Groot - Journal of Educational Psychology , 1990
"... A correlational study examined relationships between motivational orientation, self-regulated learning, and classroom academic performance for 173 seventh graders from eight science and seven English classes. A self-report measure of student self-efficacy, intrinsic value, test anxiety, self-regulat ..."
Abstract - Cited by 679 (6 self) - Add to MetaCart
-regulation, and use of learning strategies was administered, and performance data were obtained from work on classroom assignments. Self-efficacy and intrinsic value were positively related to cognitive engagement and performance. Regression analyses revealed that, depending on the outcome measure, self

Computing Inequality: Have Computers Changed the Labor Market?

by David H. Autor, Lawrence F. Katz, Alan B. Krueger - QUARTERLY JOURNAL OF ECONOMICS , 1998
"... This paper examines the effect of skill-biased technological change as measured by computerization on the recent widening of U. S. educational wage differentials. An analysis of aggregate changes in the relative supplies and wages of workers by education from 1940 to 1996 indicates strong and persis ..."
Abstract - Cited by 486 (17 self) - Add to MetaCart
and persistent growth in relative demand favoring college graduates. Rapid skill upgrading within detailed industries accounts for most of the growth in the relative demand for college workers, particularly since 1970. Analyses of four data sets indicate that the rate of skill upgrading has been greater in more
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