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2,327
Haploview: analysis and visualization of LD and haplotype maps
- BIOINFORMATICS
, 2005
"... Summary: Research over the last few years has revealed significant haplotype structure in the human genome. The characterization of these patterns, particularly in the con-text of medical genetic association studies, is becoming a routine research activity. Haploview is a software pack-age that prov ..."
Abstract
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Cited by 1275 (6 self)
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-age that provides computation of linkage disequilibrium statistics and population haplotype patterns from primary genotype data in a visually appealing and interactive interface.
UCSF Chimera—a visualization system for exploratory research and analysis
- J. Comput. Chem
, 2004
"... Abstract: The design, implementation, and capabilities of an extensible visualization system, UCSF Chimera, are discussed. Chimera is segmented into a core that provides basic services and visualization, and extensions that provide most higher level functionality. This architecture ensures that the ..."
Abstract
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Cited by 504 (7 self)
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session interactively despite being at separate locales. Other extensions include Multalign Viewer, for showing multiple sequence alignments and associated structures; ViewDock, for screening docked ligand orientations; Movie, for replaying molecular dynamics trajectories; and Volume Viewer, for display
OPTICS: Ordering Points To Identify the Clustering Structure
, 1999
"... Cluster analysis is a primary method for database mining. It is either used as a stand-alone tool to get insight into the distribution of a data set, e.g. to focus further analysis and data processing, or as a preprocessing step for other algorithms operating on the detected clusters. Almost all of ..."
Abstract
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Cited by 527 (51 self)
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.g. representative points, arbitrary shaped clusters), but also the intrinsic clustering structure. For medium sized data sets, the cluster-ordering can be represented graphically and for very large data sets, we introduce an appropriate visualization technique. Both are suitable for interactive exploration
EEGLAB: an open source toolbox for analysis of single-trial EEG dynamics including independent component analysis
- J. Neurosci. Methods
"... Abstract: We have developed a toolbox and graphic user interface, EEGLAB, running under the cross-platform MATLAB environment (The Mathworks, Inc.) for processing collections of single-trial and/or averaged EEG data of any number of channels. Available functions include EEG data, channel and event i ..."
Abstract
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Cited by 886 (45 self)
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the behavior of EEGLAB to available memory. Middle-layer functions allow users to customize data processing using command history and interactive ‘pop ’ functions. Experienced MATLAB users can use EEGLAB data structures and stand-alone signal processing functions to write custom and/or batch analysis scripts
Application of Phylogenetic Networks in Evolutionary Studies
- SUBMITTED TO MBE 2005
, 2005
"... The evolutionary history of a set of taxa is usually represented by a phylogenetic tree, and this model has greatly facilitated the discussion and testing of hypotheses. However, it is well known that more complex evolutionary scenarios are poorly described by such models. Further, even when evoluti ..."
Abstract
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Cited by 887 (15 self)
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evolution proceeds in a tree-like manner, analysis of the data may not be best served by using methods that enforce a tree structure, but rather by a richer visualization of the data to evaluate its properties, at least as an essential first step. Thus, phylogenetic networks should be employed when
View Interpolation for Image Synthesis
"... Image-space simplifications have been used to accelerate the calculation of computer graphic images since the dawn of visual simulation. Texture mapping has been used to provide a means by which images may themselves be used as display primitives. The work reported by this paper endeavors to carry t ..."
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Cited by 603 (0 self)
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Image-space simplifications have been used to accelerate the calculation of computer graphic images since the dawn of visual simulation. Texture mapping has been used to provide a means by which images may themselves be used as display primitives. The work reported by this paper endeavors to carry
Arb: A software environment for sequence data
- Nucleic Acids Res
, 2004
"... The ARB (from Latin arbor, tree) project was initiated almost 10 years ago. The ARB program package comprises a variety of directly interacting software tools for sequence database maintenance and analysis which are controlled by a common graphical user interface. Although it was initially designed ..."
Abstract
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Cited by 421 (10 self)
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phylogenetic tree visualized in the main window can be used for data access and visualization. The package comprises additional tools for data import and export, sequence alignment, primary and secondary structure editing, pro-®le and ®lter calculation, phylogenetic analyses, speci®c hybridization probe design
Octrees for faster isosurface generation
- IEEE TRANSACTIONS ON MEDICAL IMAGING
, 2000
"... The large size of many volume data sets often prevents visualization algorithms from providing interactive rendering. The use of hierarchical data structures can ameliorate this problem by storing summary information to prevent useless exploration of regions of little or no current interest within ..."
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Cited by 322 (3 self)
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The large size of many volume data sets often prevents visualization algorithms from providing interactive rendering. The use of hierarchical data structures can ameliorate this problem by storing summary information to prevent useless exploration of regions of little or no current interest within
Visualizing Tags over Time”,
, 2006
"... ABSTRACT We consider the problem of visualizing the evolution of tags within the Flickr (flickr.com) online image sharing community. Any user of the Flickr service may append a tag to any photo in the system. Over the past year, users have on average added over a million tags each week. Understandi ..."
Abstract
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Cited by 160 (0 self)
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with the interesting tags as they evolve over time. New algorithms and data structures are required to support the efficient generation of this visualization. We combine a novel solution to an interval covering problem with extensions to previous work on score aggregation in order to create an efficient backend system
Curvature for visualization of seismic geomorphology
"... Abstract: We illustrate the use of curvature attributes for defining stratigraphic features of interest on horizons mapped in three-dimensional seismic data. Curvature is a two-dimensional property of a curve that quantifies how much the curve deviates from a straight line. Many different types of c ..."
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-dimensional (3D) seismic technology has provided geoscientists with unsur-passed opportunities for identifying stratigraphic and structural features of interest in the subsurface. Many different visualization techniques have been developed for viewing 3D data volumes, including vertical transects, timeslices
Results 1 - 10
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2,327