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Human protein reference database—2006 update

by Gopa R. Mishra, M. Suresh, K. Kumaran, N. Kannabiran, Shubha Suresh, P. Bala, K. Shivakumar, N. Anuradha, Raghunath Reddy, T. Madhan Raghavan, Shalini Menon, G. Hanumanthu, Malvika Gupta, Sapna Upendran, Shweta Gupta, M. Mahesh, Bincy Jacob, Pinky Mathew, Pritam Chatterjee, K. S. Arun, Salil Sharma, K. N. Ch, An Deshp, Kshitish Palvankar, R. Raghavnath, R. Krishnakanth, Hiren Karathia, B. Rekha, Rashmi Nayak, Krishna S. Deshp, Malabika Sarker, T. S. Keshava Prasad, Akhilesh P - Nucleic Acids Res , 2006
"... Human Protein Reference Database (HPRD) ..."
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Human Protein Reference Database (HPRD)

The SWISS-PROT protein sequence database and its supplement TrEMBL in 2000

by Amos Bairoch, Rolf Apweiler - Nucleic Acids Res , 2000
"... SWISS-PROT is a curated protein sequence database which strives to provide a high level of annotation (such as the description of the function of a protein, its domains structure, post-translational modifications, variants, etc.), a minimal level of redundancy and high level of integration with othe ..."
Abstract - Cited by 773 (21 self) - Add to MetaCart
SWISS-PROT is a curated protein sequence database which strives to provide a high level of annotation (such as the description of the function of a protein, its domains structure, post-translational modifications, variants, etc.), a minimal level of redundancy and high level of integration

The SWISS-MODEL Workspace: A web-based environment for protein structure homology modelling

by Konstantin Arnold, Lorenza Bordoli, Torsten Schwede, et al. - BIOINFORMATICS , 2005
"... Motivation: Homology models of proteins are of great interest for planning and analyzing biological experiments when no experimental three-dimensional structures are available. Building homology models requires specialized programs and up-to-date sequence and structural databases. Integrating all re ..."
Abstract - Cited by 575 (5 self) - Add to MetaCart
databases necessary for modelling are accessible from the workspace and are updated in regular intervals. Tools for template selection, model building, and structure quality evaluation can be invoked from within the workspace. Workflow and usage of the workspace are illustrated by modelling human Cyclin A1

MIPS: a database for genomes and protein sequences

by H. W. Mewes, D. Frishman, U. Gildener, G. Mannhaupt, K. Mayer, M. Mokrejs, B. Morgenstern, M. Minsterkötter, S. Rudd, B. Weil - Nucleic Acids Res , 2002
"... The Munich Information Center for Protein Sequences (MIPS-GSF, Neuherberg, Germany) continues to provide genome-related information in a systematic way. MIPS supports both national and European sequencing and functional analysis projects, develops and maintains automatically generated and manually a ..."
Abstract - Cited by 336 (10 self) - Add to MetaCart
annotated genome-specific databases, develops systematic classification schemes for the functional annotation of protein sequences, and provides tools for the comprehensive analysis of protein sequences. This report updates the information on the yeast genome (CYGD), the Neurospora crassa genome (MNCDB

UniProt: the Universal Protein Knowledgebase

by Rolf Apweiler, Amos Bairoch, Cathy H. Wu, Winona C. Barker, Brigitte Boeckmann, Serenella Ferro, Elisabeth Gasteiger, Hongzhan Huang, Rodrigo Lopez, Michele Magrane, Maria J. Martin, Darren A. Natale, Claire O'Donovan, Nicole Redaschi, Lai-Su L. Yeh - NUCLEIC ACIDS RES , 2004
"... To provide the scientific community with a single, centralized, authoritative resource for protein sequences and functional information, the Swiss-Prot, TrEMBL and PIR protein database activities have united to form the Universal Protein Knowledgebase (UniProt) consortium. Our mission is to provide ..."
Abstract - Cited by 335 (27 self) - Add to MetaCart
a comprehensive, fully classified, richly and accurately annotated protein sequence knowledgebase, with extensive cross-references and query interfaces. The central database will have two sections, corresponding to the familiar Swiss-Prot (fully manually curated entries) and TrEMBL (enriched

STRING: a database of predicted functional associations between proteins

by Christian Von Mering, Martijn Huynen, Daniel Jaeggi, Steffen Schmidt, Peer Bork, Berend Snel - Nucleic Acids Res , 2003
"... Functional links between proteins can often be inferred from genomic associations between the genes that encode them: groups of genes that are required for the same function tend to show similar species coverage, are often located in close proximity on the genome (in prokaryotes), and tend to be inv ..."
Abstract - Cited by 180 (12 self) - Add to MetaCart
the significance of individual predictions. Thus, STRING contains a unique scoring-framework based on benchmarks of the different types of associations against a common reference set, integrated in a single confidence score per prediction. The graphical representation of the network of inferred, weighted protein

Curated databases

by Peter Buneman, James Cheney, Wang-chiew Tan, Stijn Vansummeren - PODS'08 , 2008
"... Curated databases are databases that are populated and updated with a great deal of human effort. Most reference works that one traditionally found on the reference shelves of libraries – dictionaries, encyclopedias, gazetteers etc. – are now curated databases. Since it is now easy to publish databa ..."
Abstract - Cited by 105 (12 self) - Add to MetaCart
Curated databases are databases that are populated and updated with a great deal of human effort. Most reference works that one traditionally found on the reference shelves of libraries – dictionaries, encyclopedias, gazetteers etc. – are now curated databases. Since it is now easy to publish

doi:10.1093/nar/gkn892 Human Protein Reference Database—2009 update

by T. S. Keshava Prasad, Renu Goel, Kumaran K, Shivakumar Keerthikumar, Sameer Kumar, Suresh Mathivanan, Deepthi Telikicherla, Rajesh Raju, Beema Shafreen, Abhilash Venugopal, Lavanya Balakrishnan, Arivusudar Marimuthu, Sutopa Banerjee, Devi S. Somanathan, Aimy Sebastian, Hya Rani, Somak Ray, C. J. Harrys Kishore, Sashi Kanth, Mukhtar Ahmed, Manoj K. Kashyap, Riaz Mohmood, Y. L. Ramach, V. Krishna, B. Abdul Rahiman, Sujatha Mohan, Prathibha Ranganathan, Subhashri Ramabadran , 2008
"... Human Protein Reference Database ..."
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Human Protein Reference Database

Human protein reference database as a discovery resource for proteomics. Nucleic Acids Res, 32 Database issue, D497–501

by Suraj Peri, J. Daniel Navarro, Troels Z. Kristiansen, Ramars Amanchy, Vineeth Surendranath, Babylakshmi Muthusamy, K. N. Ch, An Deshp, Shubha Suresh, B. P. Rashmi, K. Shanker, N. Padma, Vidya Niranjan, H. C. Harsha, Naveen Talreja, B. M. Vrushabendra, M. A. Ramya, A. J. Yatish, Mary Joy, H. N. Shivashankar, M. P. Kavitha, Minal Menezes, Dipanwita Roy Choudhury, Neelanjana Ghosh, R. Saravana, Sreenath Ch, Sujatha Mohan, Ra Kiran Jonnalagadda, C. K. Prasad, An Kumar-sinha, Krishna S. Deshp, Akhilesh P - Journal Article , 2004
"... for proteomics ..."
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for proteomics

RefSeq: an update on mammalian reference sequences

by Kim D. Pruitt, Garth R. Brown, Susan M. Hiatt, Er Astashyn, Olga Ermolaeva, Catherine M. Farrell, Jennifer Hart, Melissa J. L, Kelly M. Mcgarvey, Michael R. Murphy, Nuala A. O’leary, Shashikant Pujar, Bhanu Rajput, Sanjida H. Rangwala, Lillian D. Riddick, Andrei Shkeda, Hanzhen Sun, Pamela Tamez, Raymond E. Tully, Craig Wallin, David Webb, Janet Weber, Wendy Wu, Michael Dicuccio, Paul Kitts, Donna R. Maglott, Terence D. Murphy, James M. Ostell - Nucleic Acids Res , 2014
"... The National Center for Biotechnology Information (NCBI) Reference Sequence (RefSeq) database is a collection of annotated genomic, transcript and protein sequence records derived from data in public sequence archives and from computation, curation and collaboration ..."
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The National Center for Biotechnology Information (NCBI) Reference Sequence (RefSeq) database is a collection of annotated genomic, transcript and protein sequence records derived from data in public sequence archives and from computation, curation and collaboration
Results 1 - 10 of 455