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12,601
gSpan: GraphBased Substructure Pattern Mining
, 2002
"... We investigate new approaches for frequent graphbased pattern mining in graph datasets and propose a novel algorithm called gSpan (graphbased Substructure pattern mining) , which discovers frequent substructures without candidate generation. gSpan builds a new lexicographic order among graphs, and ..."
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Cited by 650 (34 self)
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, and maps each graph to a unique minimum DFS code as its canonical label. Based on this lexicographic order, gSpan adopts the depthfirst search strategy to mine frequent connected subgraphs efficiently. Our performance study shows that gSpan substantially outperforms previous algorithms, sometimes
The geometry of graphs and some of its algorithmic applications
 COMBINATORICA
, 1995
"... In this paper we explore some implications of viewing graphs as geometric objects. This approach offers a new perspective on a number of graphtheoretic and algorithmic problems. There are several ways to model graphs geometrically and our main concern here is with geometric representations that res ..."
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Cited by 524 (19 self)
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that respect the metric of the (possibly weighted) graph. Given a graph G we map its vertices to a normed space in an attempt to (i) Keep down the dimension of the host space and (ii) Guarantee a small distortion, i.e., make sure that distances between vertices in G closely match the distances between
Treemaps: a spacefilling approach to the visualization of hierarchical information structures
 PROC. 2ND INTERNATIONAL VISUALIZATION CONFERENCE 1991. IEEE
, 1991
"... This paper describes a novel method for the visualization of hierarchically structured information. The TreeMap visualization technique makes 100 % use of the available display space, mapping the full hierarchy onto a rectangular region in a spacefilling manner. This efficient use of space allows ..."
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Cited by 476 (26 self)
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This paper describes a novel method for the visualization of hierarchically structured information. The TreeMap visualization technique makes 100 % use of the available display space, mapping the full hierarchy onto a rectangular region in a spacefilling manner. This efficient use of space allows
Similarity Flooding: A Versatile Graph Matching Algorithm and Its Application to Schema Matching
, 2002
"... Matching elements of two data schemas or two data instances plays a key role in data warehousing, ebusiness, or even biochemical applications. In this paper we present a matching algorithm based on a fixpoint computation that is usable across different scenarios. The algorithm takes two graphs (sch ..."
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Cited by 592 (12 self)
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(schemas, catalogs, or other data structures) as input, and produces as output a mapping between corresponding nodes of the graphs. Depending on the matching goal, a subset of the mapping is chosen using filters. After our algorithm runs, we expect a human to check and if necessary adjust the results. As a
Knowledgebased Analysis of Microarray Gene Expression Data By Using Support Vector Machines
, 2000
"... We introduce a method of functionally classifying genes by using gene expression data from DNA microarray hybridization experiments. The method is based on the theory of support vector machines (SVMs). SVMs are considered a supervised computer learning method because they exploit prior knowledge of ..."
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Cited by 520 (8 self)
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of gene function to identify unknown genes of similar function from expression data. SVMs avoid several problems associated with unsupervised clustering methods, such as hierarchical clustering and selforganizing maps. SVMs have many mathematical features that make them attractive for gene expression
Efficient semantic matching
, 2004
"... We think of Match as an operator which takes two graphlike structures and produces a mapping between semantically related nodes. We concentrate on classifications with tree structures. In semantic matching, correspondences are discovered by translating the natural language labels of nodes into prop ..."
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Cited by 855 (68 self)
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We think of Match as an operator which takes two graphlike structures and produces a mapping between semantically related nodes. We concentrate on classifications with tree structures. In semantic matching, correspondences are discovered by translating the natural language labels of nodes
Laplacian eigenmaps and spectral techniques for embedding and clustering.
 Proceeding of Neural Information Processing Systems,
, 2001
"... Abstract Drawing on the correspondence between the graph Laplacian, the LaplaceBeltrami op erator on a manifold , and the connections to the heat equation , we propose a geometrically motivated algorithm for constructing a representation for data sampled from a low dimensional manifold embedded in ..."
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Cited by 668 (7 self)
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comes from the role of the Laplacian op erator in providing an optimal emb edding. Th e Laplacian of the graph obtained from the data points may be viewed as an approximation to the LaplaceBeltrami operator defined on the manifold. The emb edding maps for the data come from approximations to a natural
Where the REALLY Hard Problems Are
 IN J. MYLOPOULOS AND R. REITER (EDS.), PROCEEDINGS OF 12TH INTERNATIONAL JOINT CONFERENCE ON AI (IJCAI91),VOLUME 1
, 1991
"... It is well known that for many NPcomplete problems, such as KSat, etc., typical cases are easy to solve; so that computationally hard cases must be rare (assuming P != NP). This paper shows that NPcomplete problems can be summarized by at least one "order parameter", and that the hard p ..."
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Cited by 683 (1 self)
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problems occur at a critical value of such a parameter. This critical value separates two regions of characteristically different properties. For example, for Kcolorability, the critical value separates overconstrained from underconstrained random graphs, and it marks the value at which the probability
Dynamic Bayesian Networks: Representation, Inference and Learning
, 2002
"... Modelling sequential data is important in many areas of science and engineering. Hidden Markov models (HMMs) and Kalman filter models (KFMs) are popular for this because they are simple and flexible. For example, HMMs have been used for speech recognition and biosequence analysis, and KFMs have bee ..."
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Cited by 770 (3 self)
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sequential data.
In particular, the main novel technical contributions of this thesis are as follows: a way of representing
Hierarchical HMMs as DBNs, which enables inference to be done in O(T) time instead of O(T 3), where T is the length of the sequence; an exact smoothing algorithm that takes O(log T
Crystallography & NMR system: A new software suite for macromolecular structure determination.
 Acta Crystallogr. D Biol. Crystallogr.
, 1998
"... Abstract A new software suite, called Crystallography & NMR System (CNS), has been developed for macromolecular structure determination by Xray crystallography or solution nuclear magnetic resonance (NMR) spectroscopy. In contrast to existing structure determination programs the architecture o ..."
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Cited by 1411 (6 self)
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of CNS is highly flexible, allowing for extension to other structure determination methods, such as electron microscopy and solid state NMR spectroscopy. CNS has a hierarchical structure: a highlevel hypertext markup language (HTML) user interface, taskoriented user input files, module files, a
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