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An introduction to hidden Markov models
 IEEE ASSp Magazine
, 1986
"... The basic theory of Markov chains has been known to ..."
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Cited by 1110 (2 self)
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The basic theory of Markov chains has been known to
What is a hidden Markov model?
, 2004
"... Often, problems in biological sequence analysis are just a matter of putting the right label on each residue. In gene identification, we want to label nucleotides as exons, introns, or intergenic sequence. In sequence alignment, we want to associate residues in a query sequence with homologous resi ..."
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Cited by 1333 (8 self)
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, and a polyadenylation signal. All too often, piling more reality onto a fragile ad hoc program makes it collapse under its own weight. Hidden Markov models (HMMs) are a formal foundation for making probabilistic models of
Coupled hidden Markov models for complex action recognition
, 1996
"... We present algorithms for coupling and training hidden Markov models (HMMs) to model interacting processes, and demonstrate their superiority to conventional HMMs in a vision task classifying twohanded actions. HMMs are perhaps the most successful framework in perceptual computing for modeling and ..."
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Cited by 497 (22 self)
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We present algorithms for coupling and training hidden Markov models (HMMs) to model interacting processes, and demonstrate their superiority to conventional HMMs in a vision task classifying twohanded actions. HMMs are perhaps the most successful framework in perceptual computing for modeling
Discriminative Training Methods for Hidden Markov Models: Theory and Experiments with Perceptron Algorithms
, 2002
"... We describe new algorithms for training tagging models, as an alternative to maximumentropy models or conditional random fields (CRFs). The algorithms rely on Viterbi decoding of training examples, combined with simple additive updates. We describe theory justifying the algorithms through a modific ..."
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Cited by 641 (16 self)
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We describe new algorithms for training tagging models, as an alternative to maximumentropy models or conditional random fields (CRFs). The algorithms rely on Viterbi decoding of training examples, combined with simple additive updates. We describe theory justifying the algorithms through a
Segmentation of brain MR images through a hidden Markov random field model and the expectationmaximization algorithm
 IEEE TRANSACTIONS ON MEDICAL. IMAGING
, 2001
"... The finite mixture (FM) model is the most commonly used model for statistical segmentation of brain magnetic resonance (MR) images because of its simple mathematical form and the piecewise constant nature of ideal brain MR images. However, being a histogrambased model, the FM has an intrinsic limi ..."
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Cited by 619 (14 self)
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based methods produce unreliable results. In this paper, we propose a novel hidden Markov random field (HMRF) model, which is a stochastic process generated by a MRF whose state sequence cannot be observed directly but which can be indirectly estimated through observations. Mathematically, it can be shown
Predicting Transmembrane Protein Topology with a Hidden Markov Model: Application to Complete Genomes
 J. MOL. BIOL
, 2001
"... ..."
Maximum entropy markov models for information extraction and segmentation
, 2000
"... Hidden Markov models (HMMs) are a powerful probabilistic tool for modeling sequential data, and have been applied with success to many textrelated tasks, such as partofspeech tagging, text segmentation and information extraction. In these cases, the observations are usually modeled as multinomial ..."
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Cited by 554 (18 self)
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Hidden Markov models (HMMs) are a powerful probabilistic tool for modeling sequential data, and have been applied with success to many textrelated tasks, such as partofspeech tagging, text segmentation and information extraction. In these cases, the observations are usually modeled
Markov Random Field Models in Computer Vision
, 1994
"... . A variety of computer vision problems can be optimally posed as Bayesian labeling in which the solution of a problem is defined as the maximum a posteriori (MAP) probability estimate of the true labeling. The posterior probability is usually derived from a prior model and a likelihood model. The l ..."
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Cited by 515 (18 self)
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. The latter relates to how data is observed and is problem domain dependent. The former depends on how various prior constraints are expressed. Markov Random Field Models (MRF) theory is a tool to encode contextual constraints into the prior probability. This paper presents a unified approach for MRF modeling
Reversible jump Markov chain Monte Carlo computation and Bayesian model determination
 Biometrika
, 1995
"... Markov chain Monte Carlo methods for Bayesian computation have until recently been restricted to problems where the joint distribution of all variables has a density with respect to some xed standard underlying measure. They have therefore not been available for application to Bayesian model determi ..."
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Cited by 1330 (24 self)
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Markov chain Monte Carlo methods for Bayesian computation have until recently been restricted to problems where the joint distribution of all variables has a density with respect to some xed standard underlying measure. They have therefore not been available for application to Bayesian model
Exact Sampling with Coupled Markov Chains and Applications to Statistical Mechanics
, 1996
"... For many applications it is useful to sample from a finite set of objects in accordance with some particular distribution. One approach is to run an ergodic (i.e., irreducible aperiodic) Markov chain whose stationary distribution is the desired distribution on this set; after the Markov chain has ..."
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Cited by 548 (13 self)
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For many applications it is useful to sample from a finite set of objects in accordance with some particular distribution. One approach is to run an ergodic (i.e., irreducible aperiodic) Markov chain whose stationary distribution is the desired distribution on this set; after the Markov chain
Results 1  10
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536,762