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Modeling and simulation of genetic regulatory systems: A literature review

by Hidde De Jong - JOURNAL OF COMPUTATIONAL BIOLOGY , 2002
"... In order to understand the functioning of organisms on the molecular level, we need to know which genes are expressed, when and where in the organism, and to which extent. The regulation of gene expression is achieved through genetic regulatory systems structured by networks of interactions between ..."
Abstract - Cited by 729 (15 self) - Add to MetaCart
In order to understand the functioning of organisms on the molecular level, we need to know which genes are expressed, when and where in the organism, and to which extent. The regulation of gene expression is achieved through genetic regulatory systems structured by networks of interactions between

Genetic Programming

by John R. Koza , 1997
"... Introduction Genetic programming is a domain-independent problem-solving approach in which computer programs are evolved to solve, or approximately solve, problems. Genetic programming is based on the Darwinian principle of reproduction and survival of the fittest and analogs of naturally occurring ..."
Abstract - Cited by 1051 (12 self) - Add to MetaCart
is now called the genetic algorithm (GA). The genetic algorithm attempts to find a good (or best) solution to the problem by genetically breeding a population of individuals over a series of generations. In the genetic algorithm, each individual in the population represents a candidate solut

A comparative analysis of selection schemes used in genetic algorithms

by David E. Goldberg, Kalyanmoy Deb - Foundations of Genetic Algorithms , 1991
"... This paper considers a number of selection schemes commonly used in modern genetic algorithms. Specifically, proportionate reproduction, ranking selection, tournament selection, and Genitor (or «steady state") selection are compared on the basis of solutions to deterministic difference or d ..."
Abstract - Cited by 512 (32 self) - Add to MetaCart
This paper considers a number of selection schemes commonly used in modern genetic algorithms. Specifically, proportionate reproduction, ranking selection, tournament selection, and Genitor (or «steady state") selection are compared on the basis of solutions to deterministic difference

Planning Algorithms

by Steven M LaValle , 2004
"... This book presents a unified treatment of many different kinds of planning algorithms. The subject lies at the crossroads between robotics, control theory, artificial intelligence, algorithms, and computer graphics. The particular subjects covered include motion planning, discrete planning, planning ..."
Abstract - Cited by 1108 (51 self) - Add to MetaCart
This book presents a unified treatment of many different kinds of planning algorithms. The subject lies at the crossroads between robotics, control theory, artificial intelligence, algorithms, and computer graphics. The particular subjects covered include motion planning, discrete planning

Instance-based learning algorithms

by David W. Aha, Dennis Kibler, Marc K. Albert - Machine Learning , 1991
"... Abstract. Storing and using specific instances improves the performance of several supervised learning algorithms. These include algorithms that learn decision trees, classification rules, and distributed networks. However, no investigation has analyzed algorithms that use only specific instances to ..."
Abstract - Cited by 1359 (18 self) - Add to MetaCart
to solve incremental learning tasks. In this paper, we describe a framework and methodology, called instance-based learning, that generates classification predictions using only specific instances. Instance-based learning algorithms do not maintain a set of abstractions derived from specific instances

The Elements of Statistical Learning -- Data Mining, Inference, and Prediction

by Trevor Hastie, Robert Tibshirani, Jerome Friedman
"... ..."
Abstract - Cited by 1320 (13 self) - Add to MetaCart
Abstract not found

MEGA5: Molecular evolutionary genetics analysis using maximum . . .

by Koichiro Tamura, Daniel Peterson, Nicholas Peterson, Glen Stecher, Masatoshi Nei, Sudhir Kumar , 2011
"... Comparative analysis of molecular sequence data is essential for reconstructing the evolutionary histories of species and inferring the nature and extent of selective forces shaping the evolution of genes and species. Here, we announce the release of Molecular Evolutionary Genetics Analysis version ..."
Abstract - Cited by 6858 (19 self) - Add to MetaCart
Comparative analysis of molecular sequence data is essential for reconstructing the evolutionary histories of species and inferring the nature and extent of selective forces shaping the evolution of genes and species. Here, we announce the release of Molecular Evolutionary Genetics Analysis version

Mfold web server for nucleic acid folding and hybridization prediction

by Michael Zuker - Nucleic Acids Res , 2003
"... The abbreviated name,‘mfold web server’,describes a number of closely related software applications available on the World Wide Web (WWW) for the prediction of the secondary structure of single stranded nucleic acids. The objective of this web server is to provide easy access to RNA and DNA folding ..."
Abstract - Cited by 1955 (0 self) - Add to MetaCart
The abbreviated name,‘mfold web server’,describes a number of closely related software applications available on the World Wide Web (WWW) for the prediction of the secondary structure of single stranded nucleic acids. The objective of this web server is to provide easy access to RNA and DNA folding

Trade Liberalization, Exit, and Productivity Improvements: Evidence from Chilean Plants

by Nina Pavcnik - Review of Economic Studies , 2002
"... This paper empirically investigates the effects of liberalized trade on plant productivity in the case of Chile. Chile presents an interesting setting to study this relationship since it underwent a massive trade liberalization that significantly exposed its plants to competition from abroad during ..."
Abstract - Cited by 530 (14 self) - Add to MetaCart
evidence of within plant productivity improvements that can be attributed to a liberalized trade for the plants in the import-competing sector. In many cases, aggregate productivity improvements stem from the reshuffling of resources and output from less to more efficient producers.

A hybrid ga/svm approach for gene selection and classification of microarray data

by Edmundo Bonilla Huerta, Béatrice Duval, Jin-kao Hao - EvoWorkshops 2006, LNCS 3907 , 2006
"... Abstract. We propose a Genetic Algorithm (GA) approach combined with Support Vector Machines (SVM) for the classification of high dimensional Microarray data. This approach is associated to a fuzzy logic based pre-filtering technique. The GA is used to evolve gene subsets whosefitnessisevaluatedbyaS ..."
Abstract - Cited by 27 (3 self) - Add to MetaCart
Abstract. We propose a Genetic Algorithm (GA) approach combined with Support Vector Machines (SVM) for the classification of high dimensional Microarray data. This approach is associated to a fuzzy logic based pre-filtering technique. The GA is used to evolve gene subsets whosefitnessisevaluatedbya
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