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Mean shift, mode seeking, and clustering
 IEEE Transactions on Pattern Analysis and Machine Intelligence
, 1995
"... AbstractMean shift, a simple iterative procedure that shifts each data point to the average of data points in its neighborhood, is generalized and analyzed in this paper. This generalization makes some kmeans like clustering algorithms its special cases. It is shown that mean shift is a modeseeki ..."
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Cited by 620 (0 self)
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seeking process on a surface constructed with a “shadow ” kernel. For Gaussian kernels, mean shift is a gradient mapping. Convergence is studied for mean shift iterations. Cluster analysis is treated as a deterministic problem of finding a fixed point of mean shift that characterizes the data. Applications
Fast Parallel Algorithms for ShortRange Molecular Dynamics
 JOURNAL OF COMPUTATIONAL PHYSICS
, 1995
"... Three parallel algorithms for classical molecular dynamics are presented. The first assigns each processor a fixed subset of atoms; the second assigns each a fixed subset of interatomic forces to compute; the third assigns each a fixed spatial region. The algorithms are suitable for molecular dyn ..."
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Cited by 622 (6 self)
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Three parallel algorithms for classical molecular dynamics are presented. The first assigns each processor a fixed subset of atoms; the second assigns each a fixed subset of interatomic forces to compute; the third assigns each a fixed spatial region. The algorithms are suitable for molecular dynamics models which can be difficult to parallelize efficiently  those with shortrange forces where the neighbors of each atom change rapidly. They can be implemented on any distributedmemory parallel machine which allows for messagepassing of data between independently executing processors. The algorithms are tested on a standard LennardJones benchmark problem for system sizes ranging from 500 to 100,000,000 atoms on several parallel supercomputers  the nCUBE 2, Intel iPSC/860 and Paragon, and Cray T3D. Comparing the results to the fastest reported vectorized Cray YMP and C90 algorithm shows that the current generation of parallel machines is competitive with conventi...
Scatter/Gather: A Clusterbased Approach to Browsing Large Document Collections
, 1992
"... Document clustering has not been well received as an information retrieval tool. Objections to its use fall into two main categories: first, that clustering is too slow for large corpora (with running time often quadratic in the number of documents); and second, that clustering does not appreciably ..."
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Cited by 772 (12 self)
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improve retrieval. We argue that these problems arise only when clustering is used in an attempt to improve conventional search techniques. However, looking at clustering as an information access tool in its own right obviates these objections, and provides a powerful new access paradigm. We present a
OPTICS: Ordering Points To Identify the Clustering Structure
, 1999
"... Cluster analysis is a primary method for database mining. It is either used as a standalone tool to get insight into the distribution of a data set, e.g. to focus further analysis and data processing, or as a preprocessing step for other algorithms operating on the detected clusters. Almost all of ..."
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Cited by 511 (49 self)
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the intrinsic clustering structure accurately. We introduce a new algorithm for the purpose of cluster analysis which does not produce a clustering of a data set explicitly; but instead creates an augmented ordering of the database representing its densitybased clustering structure. This cluster
Finding community structure in networks using the eigenvectors of matrices
, 2006
"... We consider the problem of detecting communities or modules in networks, groups of vertices with a higherthanaverage density of edges connecting them. Previous work indicates that a robust approach to this problem is the maximization of the benefit function known as “modularity ” over possible div ..."
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Cited by 500 (0 self)
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We consider the problem of detecting communities or modules in networks, groups of vertices with a higherthanaverage density of edges connecting them. Previous work indicates that a robust approach to this problem is the maximization of the benefit function known as “modularity ” over possible
FAST VOLUME RENDERING USING A SHEARWARP FACTORIZATION OF THE VIEWING TRANSFORMATION
, 1995
"... Volume rendering is a technique for visualizing 3D arrays of sampled data. It has applications in areas such as medical imaging and scientific visualization, but its use has been limited by its high computational expense. Early implementations of volume rendering used bruteforce techniques that req ..."
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Cited by 541 (2 self)
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that require on the order of 100 seconds to render typical data sets on a workstation. Algorithms with optimizations that exploit coherence in the data have reduced rendering times to the range of ten seconds but are still not fast enough for interactive visualization applications. In this thesis we present a
Fast Folding and Comparison of RNA Secondary Structures (The Vienna RNA Package)
"... Computer codes for computation and comparison of RNA secondary structures, the Vienna RNA package, are presented, that are based on dynamic programming algorithms and aim at predictions of structures with minimum free energies as well as at computations of the equilibrium partition functions and bas ..."
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Cited by 812 (119 self)
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Computer codes for computation and comparison of RNA secondary structures, the Vienna RNA package, are presented, that are based on dynamic programming algorithms and aim at predictions of structures with minimum free energies as well as at computations of the equilibrium partition functions and base pairing probabilities. An efficient heuristic for the inverse folding problem of RNA is introduced. In addition we present compact and efficient programs for the comparison of RNA secondary structures based on tree editing and alignment. All computer codes are written in ANSI C. They include implementations of modified algorithms on parallel computers with distributed memory. Performance analysis carried out on an Intel Hypercube shows that parallel computing becomes gradually more and more efficient the longer the sequences are.
A Fast and Elitist MultiObjective Genetic Algorithm: NSGAII
, 2000
"... Multiobjective evolutionary algorithms which use nondominated sorting and sharing have been mainly criticized for their (i) O(MN computational complexity (where M is the number of objectives and N is the population size), (ii) nonelitism approach, and (iii) the need for specifying a sharing param ..."
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Cited by 1707 (58 self)
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parameter. In this paper, we suggest a nondominated sorting based multiobjective evolutionary algorithm (we called it the Nondominated Sorting GAII or NSGAII) which alleviates all the above three difficulties. Specifically, a fast nondominated sorting approach with O(MN ) computational complexity
GPFS: A SharedDisk File System for Large Computing Clusters
 In Proceedings of the 2002 Conference on File and Storage Technologies (FAST
, 2002
"... GPFS is IBM's parallel, shareddisk file system for cluster computers, available on the RS/6000 SP parallel supercomputer and on Linux clusters. GPFS is used on many of the largest supercomputers in the world. GPFS was built on many of the ideas that were developed in the academic community ove ..."
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Cited by 518 (3 self)
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GPFS is IBM's parallel, shareddisk file system for cluster computers, available on the RS/6000 SP parallel supercomputer and on Linux clusters. GPFS is used on many of the largest supercomputers in the world. GPFS was built on many of the ideas that were developed in the academic community
A Fast Elitist NonDominated Sorting Genetic Algorithm for MultiObjective Optimization: NSGAII
, 2000
"... Multiobjective evolutionary algorithms which use nondominated sorting and sharing have been mainly criticized for their (i) 4 computational complexity (where is the number of objectives and is the population size), (ii) nonelitism approach, and (iii) the need for specifying a sharing ..."
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Cited by 634 (15 self)
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sharing parameter. In this paper, we suggest a nondominated sorting based multiobjective evolutionary algorithm (we called it the Nondominated Sorting GAII or NSGAII) which alleviates all the above three difficulties. Specifically, a fast nondominated sorting approach with computational
Results 1  10
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