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617,834
Vingron M: Finding associations among histone modifications using sparse partial correlation networks
 PLoS Comput Biol 2013
"... Histone modifications are known to play an important role in the regulation of transcription. While individual modifications have received much attention in genomewide analyses, little is known about their relationships. Some authors have built Bayesian networks of modifications, however most often ..."
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Cited by 8 (5 self)
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, correlations among two variables are controlled for associations induced by the other variables. Partial correlation networks thus focus on direct associations of histone modifications. We apply this methodology to data in CD4+ cells. The resulting network is well supported by common knowledge. When pairs
Good ErrorCorrecting Codes based on Very Sparse Matrices
, 1999
"... We study two families of errorcorrecting codes defined in terms of very sparse matrices. "MN" (MacKayNeal) codes are recently invented, and "Gallager codes" were first investigated in 1962, but appear to have been largely forgotten, in spite of their excellent properties. The ..."
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Cited by 741 (23 self)
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We study two families of errorcorrecting codes defined in terms of very sparse matrices. "MN" (MacKayNeal) codes are recently invented, and "Gallager codes" were first investigated in 1962, but appear to have been largely forgotten, in spite of their excellent properties
Just Relax: Convex Programming Methods for Identifying Sparse Signals in Noise
, 2006
"... This paper studies a difficult and fundamental problem that arises throughout electrical engineering, applied mathematics, and statistics. Suppose that one forms a short linear combination of elementary signals drawn from a large, fixed collection. Given an observation of the linear combination that ..."
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Cited by 496 (2 self)
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. This paper studies a method called convex relaxation, which attempts to recover the ideal sparse signal by solving a convex program. This approach is powerful because the optimization can be completed in polynomial time with standard scientific software. The paper provides general conditions which ensure
Routing in a delay tolerant network
 Proceedings of ACM Sigcomm
, 2004
"... We formulate the delaytolerant networking routing problem, where messages are to be moved endtoend across a connectivity graph that is timevarying but whose dynamics may be known in advance. The problem has the added constraints of finite buffers at each node and the general property that no con ..."
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Cited by 612 (8 self)
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algorithms and use simulations to compare their performance with respect to the amount of knowledge they require about network topology. We find that, as expected, the algorithms using the least knowledge tend to perform poorly. We also find that with limited additional knowledge, far less than complete
Epidemic Spreading in ScaleFree Networks
, 2000
"... The Internet, as well as many other networks, has a very complex connectivity recently modeled by the class of scalefree networks. This feature, which appears to be very efficient for a communications network, favors at the same time the spreading of computer viruses. We analyze real data from c ..."
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Cited by 550 (14 self)
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computer virus infections and find the average lifetime and prevalence of viral strains on the Internet. We define a dynamical model for the spreading of infections on scalefree networks, finding the absence of an epidemic threshold and its associated critical behavior. This new epidemiological
Bayesian Network Classifiers
, 1997
"... Recent work in supervised learning has shown that a surprisingly simple Bayesian classifier with strong assumptions of independence among features, called naive Bayes, is competitive with stateoftheart classifiers such as C4.5. This fact raises the question of whether a classifier with less restr ..."
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Cited by 788 (23 self)
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Recent work in supervised learning has shown that a surprisingly simple Bayesian classifier with strong assumptions of independence among features, called naive Bayes, is competitive with stateoftheart classifiers such as C4.5. This fact raises the question of whether a classifier with less
Statistical mechanics of complex networks
 Rev. Mod. Phys
"... Complex networks describe a wide range of systems in nature and society, much quoted examples including the cell, a network of chemicals linked by chemical reactions, or the Internet, a network of routers and computers connected by physical links. While traditionally these systems were modeled as ra ..."
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Cited by 2083 (10 self)
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Complex networks describe a wide range of systems in nature and society, much quoted examples including the cell, a network of chemicals linked by chemical reactions, or the Internet, a network of routers and computers connected by physical links. While traditionally these systems were modeled
A Survey on Sensor Networks
, 2002
"... Recent advancement in wireless communica tions and electronics has enabled the develop ment of lowcost sensor networks. The sensor networks can be used for various application areas (e.g., health, military, home). For different application areas, there are different technical issues that research ..."
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Cited by 1905 (1 self)
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Recent advancement in wireless communica tions and electronics has enabled the develop ment of lowcost sensor networks. The sensor networks can be used for various application areas (e.g., health, military, home). For different application areas, there are different technical issues
The LargeScale Organization of Metabolic Networks
, 2000
"... In a cell or microorganism the processes that generate mass, energy, information transfer, and cell fate specification are seamlessly integrated through a complex network of various cellular constituents and reactions. However, despite the key role these networks play in sustaining various cellular ..."
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Cited by 599 (7 self)
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and errortolerant networks, and may represent a common blueprint for the largescale organization of interactions among all cellular constituents.
Using Linear Algebra for Intelligent Information Retrieval
 SIAM REVIEW
, 1995
"... Currently, most approaches to retrieving textual materials from scientific databases depend on a lexical match between words in users' requests and those in or assigned to documents in a database. Because of the tremendous diversity in the words people use to describe the same document, lexical ..."
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Cited by 672 (18 self)
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, lexical methods are necessarily incomplete and imprecise. Using the singular value decomposition (SVD), one can take advantage of the implicit higherorder structure in the association of terms with documents by determining the SVD of large sparse term by document matrices. Terms and documents represented
Results 1  10
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617,834