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HPC Parallel Programming Model for Gyrokinetic MHD Simulation * )

by Hiroshi Naitou , Yusuke Yamada , Shinji Tokuda , Yasutomo Ishii , Masatoshi Yagi , 2011
"... The 3-dimensional gyrokinetic PIC (particle-in-cell) code for MHD simulation, Gpic-MHD, was installed on SR16000 ("Plasma Simulator"), which is a scalar cluster system consisting of 8,192 logical cores. The Gpic-MHD code advances particle and field quantities in time. In order to distribu ..."
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The 3-dimensional gyrokinetic PIC (particle-in-cell) code for MHD simulation, Gpic-MHD, was installed on SR16000 ("Plasma Simulator"), which is a scalar cluster system consisting of 8,192 logical cores. The Gpic-MHD code advances particle and field quantities in time. In order

An Integrated End-User Data Service for HPC Centers

by Henry Matthew Monti, Wu-chun Feng, Calvin J. Ribbens, Sudharshan S. Vazhkudai, Henry Matthew Monti , 2012
"... The advent of extreme-scale computing systems, e.g., Petaflop supercomputers, High Per-formance Computing (HPC) cyber-infrastructure, Enterprise databases, and experimental facilities such as large-scale particle colliders, are pushing the envelope on dataset sizes. Su-percomputing centers routinely ..."
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The advent of extreme-scale computing systems, e.g., Petaflop supercomputers, High Per-formance Computing (HPC) cyber-infrastructure, Enterprise databases, and experimental facilities such as large-scale particle colliders, are pushing the envelope on dataset sizes. Su-percomputing centers

Advanced Communication Techniques for Gyrokinetic Fusion Applications on Ultra-Scale Platforms

by Robert Preissl, John Shalf, Alice Koniges, Nathan Wichmann, Bill Long, Stephane Ethier
"... In this paper we explore new parallel language constructs for the communication kernel of a real world magnetic fusion simulation code using the Partitioned Global Address Space (PGAS) model. The studied kernel is the particle shift phase of a tokamak simulation code in a toroidal geometry, which mo ..."
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performance advantage for such bandwidth-limited kernels. Compact application versions of the new Coarray based particle movement algorithms are extracted from the fusion application and evaluated on the worlds largest HPC platform with PGAS enabled hardware (Cray XE6) and on a Cray XT4 without hardware

HPC Benchmarking and Performance Evaluation With Realistic Applications

by Brian Armstrong, Hansang Bae, Rudolf Eigenmann, Faisal Saied, Mohamed Sayeed, Yili Zheng
"... The goal of benchmarking and performance evaluation, as viewed in this paper, is to assess the performance and understand characteristics of HPC platforms and their important applications. An obvious use of the gained results is the search for machines that are best for a given purpose. Equally impo ..."
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The goal of benchmarking and performance evaluation, as viewed in this paper, is to assess the performance and understand characteristics of HPC platforms and their important applications. An obvious use of the gained results is the search for machines that are best for a given purpose. Equally

HPC for Large Scale CFD in Aircraft Design

by Mattias Sillén
"... Abstract. In aircraft development the aerodynamic design is a long lead item. To reduce the development time advanced flow modeling methods must be used earlier than today. This is however limited by the current turn around time for the simulations. To reduce the turn around time the computer platfo ..."
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Abstract. In aircraft development the aerodynamic design is a long lead item. To reduce the development time advanced flow modeling methods must be used earlier than today. This is however limited by the current turn around time for the simulations. To reduce the turn around time the computer

Report from Dagstuhl Perspectives Workshop 14022 Connecting Performance Analysis and Visualization to Advance Extreme Scale Computing Edited by

by Peer-timo Bremer, Bernd Mohr, Valerio Pascucci, Martin Schulz, Jülich Supercomputing Centre De, Peer-timo Bremer, Bernd Mohr, Valerio Pascucci, Martin Schulz, Peer-timo Bremer, Bernd Mohr, Valerio Pascucci, Martin Schulz
"... In the first week of January 2014 Dagstuhl hosted a Perspectives Workshop on “Connecting Per-formance Analysis and Visualization to Advance Extreme Scale Computing”. The event brought together two previously separate communities – from Visualization and HPC Performance Ana-lysis – to discuss a long ..."
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In the first week of January 2014 Dagstuhl hosted a Perspectives Workshop on “Connecting Per-formance Analysis and Visualization to Advance Extreme Scale Computing”. The event brought together two previously separate communities – from Visualization and HPC Performance Ana-lysis – to discuss a long

ABSTRACT Investigation Of Leading HPC I/O Performance Using A Scientific-Application Derived Benchmark

by Julian Borrill, Leonid Oliker, John Shalf, Hongzhang Shan
"... With the exponential growth of high-fidelity sensor and simulated data, the scientific community is increasingly reliant on ultrascale HPC resources to handle their data analysis requirements. However, to utilize such extreme computing power effectively, the I/O components must be designed in a bala ..."
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With the exponential growth of high-fidelity sensor and simulated data, the scientific community is increasingly reliant on ultrascale HPC resources to handle their data analysis requirements. However, to utilize such extreme computing power effectively, the I/O components must be designed in a

HPC Global File System Performance Analysis Using A Scientific-Application Derived Benchmark

by Julian Borrill, Leonid Oliker, John Shalf, Hongzhang Shan, Andrew Uselton
"... With the exponential growth of high-fidelity sensor and simulated data, the scientific community is increasingly reliant on ultrascale HPC resources to handle its data analysis requirements. However, to use such extreme computing power effectively, the I/O components must be designed in a balanced f ..."
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With the exponential growth of high-fidelity sensor and simulated data, the scientific community is increasingly reliant on ultrascale HPC resources to handle its data analysis requirements. However, to use such extreme computing power effectively, the I/O components must be designed in a balanced

A Framework for Automated Performance Tuning and Code Verification on GPU Computing Platforms

by Allison S. Gehrke, Ilkyeun Ra, Daniel A. Connors
"... Abstract—Emerging multi-core processor designs create a computing paradigm capable of advancing numerous scientific areas, including medicine, data mining, biology, physics, and earth sciences. However, the trends in multi-core hardware technology have advanced far ahead of the advances in software ..."
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that automatically generates and tunes numerical solver codes for optimal performance on graphi-cal processing units. The framework advances computational simulation in kinetic modeling by significantly reducing the execution time of scientific simulations and enabling scientists to compare results to previous

PAC++:ObjectOriented Platform for Accelerator Codes

by N Malitsky , A Reshetov , G Bourianoff , 1994
"... INTRODUCTION Software packages in accelerator physics have relatively long life cycles. They had been developed and used for a wide range of accelerators in the past as well as for the current projects. For example, the basic algorithms written in the first accelerator program TRANSPORT 1 are actua ..."
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), and other features. Some later accelerator programs had been based on object-oriented tools (primarily, C++ language). These range from systems for advanced theoretical studies 10 ,12 to control system software. In this report the basic principles of an object-oriented platform for accelerator research
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