Results 1 - 10 of 114

EuPathDB: the eukaryotic pathogen database

by Cristina Aurrecoechea , Ana Barreto , John Brestelli , Brian P Brunk , Shon Cade , Ryan Doherty , Steve Fischer , Bindu Gajria , Xin Gao , Alan Gingle , Greg Grant , Omar S Harb , Mark Heiges , Sufen Hu , John Iodice , Jessica C Kissinger , Eileen T Kraemer , Wei Li , Deborah F Pinney , Brian Pitts , David S Roos , Ganesh Srinivasamoorthy , Christian J Stoeckert Jr , Haiming Wang , Susanne Warrenfeltz - Nucleic Acids Res , 2013
"... ABSTRACT EuPathDB (http://eupathdb.org) resources include 11 databases supporting eukaryotic pathogen genomic and functional genomic data, isolate data and phylogenomics. EuPathDB resources are built using the same infrastructure and provide a sophisticated search strategy system enabling complex i ..."
Abstract - Cited by 13 (2 self) - Add to MetaCart
ABSTRACT EuPathDB (http://eupathdb.org) resources include 11 databases supporting eukaryotic pathogen genomic and functional genomic data, isolate data and phylogenomics. EuPathDB resources are built using the same infrastructure and provide a sophisticated search strategy system enabling complex

EuPathDB

by Cristina Aurrecoechea, John Brestelli, Brian P. Brunk, Steve Fischer, Bindu Gajria, Xin Gao, Alan Gingle, Greg Grant, Omar S. Harb, Mark Heiges, Frank Innamorato, John Iodice, Jessica C. Kissinger, Eileen T. Kraemer, Wei Li, John A. Miller, Vishal Nayak, Cary Pennington, Deborah F. Pinney, David S. Roos, Chris Ross, Ganesh Srinivasamoorthy, Christian J. Stoeckert, Ryan Thibodeau, Charles Treatman, Haiming Wang , 2009
"... a portal to eukaryotic pathogen databases ..."
Abstract - Add to MetaCart
a portal to eukaryotic pathogen databases

EuPathDB: a portal to eukaryotic pathogen databases. Nucleic acids research

by Cristina Aurrecoechea, John Brestelli, Brian P. Brunk, Steve Fischer, Bindu Gajria, Xin Gao, Alan Gingle, Greg Grant, Omar S. Harb, Mark Heiges, Frank Innamorato, John Iodice, Jessica C. Kissinger, Eileen T. Kraemer, Wei Li, John A. Miller, Vishal Nayak, Cary Pennington, Deborah F. Pinney, David S. Roos, Chris Ross, Ganesh Srinivasamoorthy, Christian J. Stoeckert, Ryan Thibodeau, Charles Treatman , 2009
"... EuPathDB ..."
Abstract - Cited by 28 (4 self) - Add to MetaCart
EuPathDB

214 PUBLICATIONS 7,284 CITATIONS SEE PROFILE

by Jessica C Kissinger, See Profile, Eileen Kraemer, John A Miller, Ryan Thibodeau, Cristina Aurrecoechea, John Brestelli, Brian P. Brunk, Steve Fischer, Bindu Gajria, Xin Gao, Alan Gingle, Greg Grant, Omar S. Harb, Mark Heiges, Frank Innamorato, John Iodice, Jessica C. Kissinger, Eileen T. Kraemer, Wei Li, John A. Miller, Vishal Nayak, Cary Pennington, Deborah F. Pinney, David S. Roos, Chris Ross, Ganesh Srinivasamoorthy, Christian J. Stoeckert, Ryan Thibodeau, Charles Treatman , 2009
"... EuPathDB: A portal to eukaryotic pathogen databases ..."
Abstract - Add to MetaCart
EuPathDB: A portal to eukaryotic pathogen databases

Expansion of the BioCyc collection of pathway/genome databases to 160 genomes

by Peter D. Karp, Christos A. Ouzounis, Caroline Moore-kochlacs, Leon Goldovsky, Pallavi Kaipa, Dag Ahrén, Sophia Tsoka, Nikos Darzentas, Victor Kunin - Nucleic Acids Res , 2005
"... The BioCyc database collection is a set of 160 pathway/genome databases (PGDBs) for most eukaryotic and prokaryotic species whose genomes have been completely sequenced to date. Each PGDB in the BioCyc collection describes the genome and predicted metabolic network of a single organism, inferred fro ..."
Abstract - Cited by 92 (4 self) - Add to MetaCart
The BioCyc database collection is a set of 160 pathway/genome databases (PGDBs) for most eukaryotic and prokaryotic species whose genomes have been completely sequenced to date. Each PGDB in the BioCyc collection describes the genome and predicted metabolic network of a single organism, inferred

Original article The Comprehensive Phytopathogen Genomics Resource: a web-based resource for data-mining plant pathogen genomes

by John P. Hamilton, Eric C. Neeno-eckwall, Bishwo N. Adhikari, Nicole T. Perna, Ned Tisserat, Jan E. Leach, C. Andre ́ Lévesque, C. Robin Buell
"... The Comprehensive Phytopathogen Genomics Resource (CPGR) provides a web-based portal for plant pathologists and diagnosticians to view the genome and trancriptome sequence status of 806 bacterial, fungal, oomycete, nematode, viral and viroid plant pathogens. Tools are available to search and analyze ..."
Abstract - Add to MetaCart
approaches. Curated lists of bacterial genes relevant to pathogenicity and avirulence are also provided. The Plant Pathogen Transcript Assemblies Database provides annotated assemblies of the transcribed regions of 82 eukaryotic genomes from publicly available single pass Expressed Sequence Tags. Data

The bioinformatics resource for oral pathogens

by Tsute Chen, Kevin Abbey, Wen-jie Deng, Meng-chuan Cheng - Nucleic Acids Res 33:W734 –W740. http:// dx.doi.org/10.1093/nar/gki361 , 2005
"... Complete genomic sequences of several oral patho-gens have been deciphered and multiple sources of independently annotated data are available for the same genomes.Different gene identification schemes and functional annotation methods used in these databases present a challenge for cross-referencing ..."
Abstract - Cited by 7 (1 self) - Add to MetaCart
Complete genomic sequences of several oral patho-gens have been deciphered and multiple sources of independently annotated data are available for the same genomes.Different gene identification schemes and functional annotation methods used in these databases present a challenge for cross

DATABASE Open Access The Alternaria genomes database: a

by Allergy Saprophyte, Ha X Dang, Barry Pryor, Tobin Peever, Christopher B Lawrence
"... comprehensive resource for a fungal genus s, plant pathogens, database will be updated regularly with new genomes when they become available. The Alternaria genomes Dang et al. BMC Genomics (2015) 16:239 ..."
Abstract - Add to MetaCart
comprehensive resource for a fungal genus s, plant pathogens, database will be updated regularly with new genomes when they become available. The Alternaria genomes Dang et al. BMC Genomics (2015) 16:239

The National Microbial Pathogen Database Resource (NMPDR): a genomics platform based on subsystem annotation. Nucleic Acids Res

by Leslie Klis Mcneil, Claudia Reich, Ramy K. Aziz, Daniela Bartels, Matthew Cohoon, Terry Disz, Robert A. Edwards, Svetlana Gerdes, Kaitlyn Hwang, Michael Kubal, Gohar Rem Margaryan, Folker Meyer, William Mihalo, Tobias Paczian, Bruce Parrello, Gordon D. Pusch, Dmitry A. Rodionov, Xinghua Shi, Olga Vassieva, Veronika Vonstein, Olga Zagnitko, Fangfang Xia, Jenifer Zinner, Ross Overbeek, Rick Stevens , 2007
"... The National Microbial Pathogen Data Resource (NMPDR) ..."
Abstract - Cited by 11 (2 self) - Add to MetaCart
The National Microbial Pathogen Data Resource (NMPDR)

BMC Genomics BioMed Central Database AphanoDB: a genomic resource for Aphanomyces pathogens

by Mohammed-amine Madoui, Elodie Gaulin, Catherine Mathé, Hélène San, Arnaud Couloux, Patrick Wincker, Bernard Dumas, Patrick Wincker, Bernard Dumas , 2007
"... This is an Open Access article distributed under the terms of the Creative Commons Attribution License ..."
Abstract - Add to MetaCart
This is an Open Access article distributed under the terms of the Creative Commons Attribution License
Results 1 - 10 of 114