-Wide Web. The ontologies on the Web range from large taxonomies categorizing Web sites (such as on Yahoo!) to categorizations of products for sale and their features (such as on Amazon.com). The WWW Consortium (W3C) is developing the Resource Description Framework (Brickley and Guha 1999), a language

systems. We show how the development and implementation of an explicit account of a shared understanding (i.e. an `ontology') in a given subject area, can improve such communication, which in turn, can give rise to greater reuse and sharing, inter-operability, and more reliable software. After

Research on ontology is becoming increasingly widespread in the computer science community, and its importance is being recognized in a multiplicity of research fields and application areas, including knowledge engineering, database design and integration, information retrieval and extraction. We

The Suggested Upper Merged Ontology (SUMO) is an upper level ontology that has been proposed as a starter document for The Standard Upper Ontology Working Group, an IEEE-sanctioned working group of collaborators from the fields of engineering, philosophy, and information science. The SUMO provides

Recent work in Artificial Intelligence is exploring the use of formal ontologies as a way of specifying content-specific agreements for the sharing and reuse of knowledge among software entities. We take an engineering perspective on the development of such ontologies. Formal ontologies are viewed

, functions, and other objects — is called an ontology. This paper describes a mechanism for defining ontologies that are portable over representation systems. Definitions written in a standard format for predicate calculus are translated by a system called Ontolingua into specialized representations

of the sharing process. We have developed and implemented PROMPT, an algorithm that provides a semi-automatic approach to ontology merging and alignment. PROMPT performs some tasks automatically and guides the user in performing other tasks for which his intervention is required.

in current computer technology. Ontologies provide a shared and common understanding of a domain that can be communicated between people and application systems. Therefore, they may play a major role in supporting information exchange processes in various areas. This book discusses the role ontologies

The OWL Web Ontology Language is a new formal language for representing ontologies in the Semantic Web. OWL has features from several families of representation languages, including primarily Description Logics and frames. OWL also shares many characteristics with RDF, the W3C base of the Semantic

Summary: The Biological Networks Gene Ontology tool (BiNGO) is an open-source Java tool to determine which Gene Ontology (GO) terms are significantly overrepresented in a set of genes. BiNGO can be used either on a list of genes, pasted as text, or interactively on subgraphs of biological networks