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Limma: linear models for microarray data

by Gordon K. Smyth, Matthew Ritchie, Natalie Thorne, James Wettenhall, Wei Shi - Bioinformatics and Computational Biology Solutions using R and Bioconductor , 2005
"... This free open-source software implements academic research by the authors and co-workers. If you use it, please support the project by citing the appropriate journal articles listed in Section 2.1.Contents ..."
Abstract - Cited by 759 (13 self) - Add to MetaCart
This free open-source software implements academic research by the authors and co-workers. If you use it, please support the project by citing the appropriate journal articles listed in Section 2.1.Contents

Knowledge-based Analysis of Microarray Gene Expression Data By Using Support Vector Machines

by Michael P. S. Brown, William Noble Grundy, David Lin, Nello Cristianini, Charles Walsh Sugnet, Terrence S. Furey, Manuel Ares, Jr., David Haussler , 2000
"... We introduce a method of functionally classifying genes by using gene expression data from DNA microarray hybridization experiments. The method is based on the theory of support vector machines (SVMs). SVMs are considered a supervised computer learning method because they exploit prior knowledge of ..."
Abstract - Cited by 514 (8 self) - Add to MetaCart
We introduce a method of functionally classifying genes by using gene expression data from DNA microarray hybridization experiments. The method is based on the theory of support vector machines (SVMs). SVMs are considered a supervised computer learning method because they exploit prior knowledge

Tight regulation, modulation, and high-level expression by vectors containing the arabinose PBAD promoter

by L M Guzman, D Belin, M J Carson, J Beckwith - J , 1995
"... PBAD promoter. arabinoseexpression by vectors containing the Tight regulation, modulation, and high-level ..."
Abstract - Cited by 858 (14 self) - Add to MetaCart
PBAD promoter. arabinoseexpression by vectors containing the Tight regulation, modulation, and high-level

Sparse Bayesian Learning and the Relevance Vector Machine

by Michael E. Tipping, Alex Smola , 2001
"... This paper introduces a general Bayesian framework for obtaining sparse solutions to regression and classication tasks utilising models linear in the parameters. Although this framework is fully general, we illustrate our approach with a particular specialisation that we denote the `relevance vec ..."
Abstract - Cited by 958 (5 self) - Add to MetaCart
This paper introduces a general Bayesian framework for obtaining sparse solutions to regression and classication tasks utilising models linear in the parameters. Although this framework is fully general, we illustrate our approach with a particular specialisation that we denote the `relevance

Using Linear Algebra for Intelligent Information Retrieval

by Michael W. Berry, Susan T. Dumais - SIAM REVIEW , 1995
"... Currently, most approaches to retrieving textual materials from scientific databases depend on a lexical match between words in users' requests and those in or assigned to documents in a database. Because of the tremendous diversity in the words people use to describe the same document, lexical ..."
Abstract - Cited by 672 (18 self) - Add to MetaCart
Currently, most approaches to retrieving textual materials from scientific databases depend on a lexical match between words in users' requests and those in or assigned to documents in a database. Because of the tremendous diversity in the words people use to describe the same document

LIBSVM: a Library for Support Vector Machines

by Chih-chung Chang, Chih-Jen Lin , 2001
"... LIBSVM is a library for support vector machines (SVM). Its goal is to help users can easily use SVM as a tool. In this document, we present all its implementation details. 1 ..."
Abstract - Cited by 6287 (82 self) - Add to MetaCart
LIBSVM is a library for support vector machines (SVM). Its goal is to help users can easily use SVM as a tool. In this document, we present all its implementation details. 1

Real-Time Dynamic Voltage Scaling for Low-Power Embedded Operating Systems

by Padmanabhan Pillai, Kang G. Shin , 2001
"... In recent years, there has been a rapid and wide spread of nontraditional computing platforms, especially mobile and portable computing devices. As applications become increasingly sophisticated and processing power increases, the most serious limitation on these devices is the available battery lif ..."
Abstract - Cited by 498 (4 self) - Add to MetaCart
life. Dynamic Voltage Scaling (DVS) has been a key technique in exploiting the hardware characteristics of processors to reduce energy dissipation by lowering the supply voltage and operating frequency. The DVS algorithms are shown to be able to make dramatic energy savings while providing

Transductive Inference for Text Classification using Support Vector Machines

by Thorsten Joachims , 1999
"... This paper introduces Transductive Support Vector Machines (TSVMs) for text classification. While regular Support Vector Machines (SVMs) try to induce a general decision function for a learning task, Transductive Support Vector Machines take into account a particular test set and try to minimiz ..."
Abstract - Cited by 887 (4 self) - Add to MetaCart
This paper introduces Transductive Support Vector Machines (TSVMs) for text classification. While regular Support Vector Machines (SVMs) try to induce a general decision function for a learning task, Transductive Support Vector Machines take into account a particular test set and try

A Simple Estimator of Cointegrating Vectors in Higher Order Cointegrated Systems

by James H. Stock, Mark W. Watson - ECONOMETRICA , 1993
"... Efficient estimators of cointegrating vectors are presented for systems involving deterministic components and variables of differing, higher orders of integration. The estimators are computed using GLS or OLS, and Wald Statistics constructed from these estimators have asymptotic x2 distributions. T ..."
Abstract - Cited by 507 (3 self) - Add to MetaCart
Efficient estimators of cointegrating vectors are presented for systems involving deterministic components and variables of differing, higher orders of integration. The estimators are computed using GLS or OLS, and Wald Statistics constructed from these estimators have asymptotic x2 distributions

LSQR: An Algorithm for Sparse Linear Equations and Sparse Least Squares

by Christopher C. Paige, Michael A. Saunders - ACM Trans. Math. Software , 1982
"... An iterative method is given for solving Ax ~ffi b and minU Ax- b 112, where the matrix A is large and sparse. The method is based on the bidiagonalization procedure of Golub and Kahan. It is analytically equivalent to the standard method of conjugate gradients, but possesses more favorable numerica ..."
Abstract - Cited by 649 (21 self) - Add to MetaCart
-gradient algorithms, indicating that I~QR is the most reliable algorithm when A is ill-conditioned. Categories and Subject Descriptors: G.1.2 [Numerical Analysis]: ApprorJmation--least squares approximation; G.1.3 [Numerical Analysis]: Numerical Linear Algebra--linear systems (direct and
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