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1,505,540
Efficient similarity search in sequence databases
, 1994
"... We propose an indexing method for time sequences for processing similarity queries. We use the Discrete Fourier Transform (DFT) to map time sequences to the frequency domain, the crucial observation being that, for most sequences of practical interest, only the first few frequencies are strong. Anot ..."
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Cited by 505 (21 self)
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We propose an indexing method for time sequences for processing similarity queries. We use the Discrete Fourier Transform (DFT) to map time sequences to the frequency domain, the crucial observation being that, for most sequences of practical interest, only the first few frequencies are strong
Maximum Likelihood Phylogenetic Estimation from DNA Sequences with Variable Rates over Sites: Approximate Methods
 J. Mol. Evol
, 1994
"... Two approximate methods are proposed for maximum likelihood phylogenetic estimation, which allow variable rates of substitution across nucleotide sites. Three data sets with quite different characteristics were analyzed to examine empirically the performance of these methods. The first, called ..."
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Cited by 540 (28 self)
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Two approximate methods are proposed for maximum likelihood phylogenetic estimation, which allow variable rates of substitution across nucleotide sites. Three data sets with quite different characteristics were analyzed to examine empirically the performance of these methods. The first, called
Characteristics of a human cell line transformed by DNA from human adenovirus type 5
, 1977
"... Human embryonic kidney cells have been transformed by exposing cells to sheared fragments of adenovirus type 5 DNA. The transformed cells (designated 293 cells) exhibited many of the characteristics of transformation including the elaboration of a virusspecific tumour antigen. Analysis of the polyp ..."
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Cited by 671 (14 self)
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Human embryonic kidney cells have been transformed by exposing cells to sheared fragments of adenovirus type 5 DNA. The transformed cells (designated 293 cells) exhibited many of the characteristics of transformation including the elaboration of a virusspecific tumour antigen. Analysis
Factor Graphs and the SumProduct Algorithm
 IEEE TRANSACTIONS ON INFORMATION THEORY
, 1998
"... A factor graph is a bipartite graph that expresses how a "global" function of many variables factors into a product of "local" functions. Factor graphs subsume many other graphical models including Bayesian networks, Markov random fields, and Tanner graphs. Following one simple c ..."
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Cited by 1787 (72 self)
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computational rule, the sumproduct algorithm operates in factor graphs to computeeither exactly or approximatelyvarious marginal functions by distributed messagepassing in the graph. A wide variety of algorithms developed in artificial intelligence, signal processing, and digital communications can
Shape Matching and Object Recognition Using Shape Contexts
 IEEE Transactions on Pattern Analysis and Machine Intelligence
, 2001
"... We present a novel approach to measuring similarity between shapes and exploit it for object recognition. In our framework, the measurement of similarity is preceded by (1) solv ing for correspondences between points on the two shapes, (2) using the correspondences to estimate an aligning transform ..."
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Cited by 1787 (21 self)
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for this purpose. The dissimilarity between the two shapes is computed as a sum of matching errors between corresponding points, together with a term measuring the magnitude of the aligning trans form. We treat recognition in a nearestneighbor classification framework as the problem of finding the stored
Controlled and automatic human information processing
 I. Detection, search, and attention. Psychological Review
, 1977
"... A twoprocess theory of human information processing is proposed and applied to detection, search, and attention phenomena. Automatic processing is activation of a learned sequence of elements in longterm memory that is initiated by appropriate inputs and then proceeds automatically—without subjec ..."
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Cited by 841 (15 self)
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A twoprocess theory of human information processing is proposed and applied to detection, search, and attention phenomena. Automatic processing is activation of a learned sequence of elements in longterm memory that is initiated by appropriate inputs and then proceeds automatically
Comprehensive database for facial expression analysis
 in Proceedings of Fourth IEEE International Conference on Automatic Face and Gesture Recognition
"... Within the past decade, significant effort has occurred in developing methods of facial expression analysis. Because most investigators have used relatively limited data sets, the generalizability of these various methods remains unknown. We describe the problem space for facial expression analysis, ..."
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Cited by 590 (54 self)
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Pittsburgh AUCoded Face Expression Image Database, which currently includes 2105 digitized image sequences from 182 adult subjects of varying ethnicity, performing multiple tokens of most primary FACS action units. This database is the most comprehensive testbed to date for comparative studies of facial
The space complexity of approximating the frequency moments
 JOURNAL OF COMPUTER AND SYSTEM SCIENCES
, 1996
"... The frequency moments of a sequence containing mi elements of type i, for 1 ≤ i ≤ n, are the numbers Fk = �n i=1 mki. We consider the space complexity of randomized algorithms that approximate the numbers Fk, when the elements of the sequence are given one by one and cannot be stored. Surprisingly, ..."
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Cited by 855 (12 self)
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The frequency moments of a sequence containing mi elements of type i, for 1 ≤ i ≤ n, are the numbers Fk = �n i=1 mki. We consider the space complexity of randomized algorithms that approximate the numbers Fk, when the elements of the sequence are given one by one and cannot be stored. Surprisingly
Maximum entropy markov models for information extraction and segmentation
, 2000
"... Hidden Markov models (HMMs) are a powerful probabilistic tool for modeling sequential data, and have been applied with success to many textrelated tasks, such as partofspeech tagging, text segmentation and information extraction. In these cases, the observations are usually modeled as multinomial ..."
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Cited by 554 (18 self)
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as multinomial distributions over a discrete vocabulary, and the HMM parameters are set to maximize the likelihood of the observations. This paper presents a new Markovian sequence model, closely related to HMMs, that allows observations to be represented as arbitrary overlapping features (such as word
Alternative isoform regulation in human tissue transcriptomes
 Nature
, 2008
"... Through alternative processing of premRNAs, individual mammalian genes often produce multiple mRNA and protein isoforms that may have related, distinct or even opposing functions. Here we report an indepth analysis of 15 diverse human tissue and cell line transcriptomes based on deep sequencing of ..."
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Cited by 525 (4 self)
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of cDNA fragments, yielding a digital inventory of gene and mRNA isoform expression. Analysis of mappings of sequence reads to exonexon junctions indicated that 9294% of human genes undergo alternative splicing (AS), ∼86 % with a minor isoform frequency of 15% or more. Differences in isoform
Results 1  10
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