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568,439
Basecalling of automated sequencer traces using phred. I. Accuracy Assessment
 GENOME RES
, 1998
"... The availability of massive amounts of DNA sequence information has begun to revolutionize the practice of biology. As a result, current largescale sequencing output, while impressive, is not adequate to keep pace with growing demand and, in particular, is far short of what will be required to obta ..."
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Cited by 1602 (4 self)
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improved accuracy of the data processing software and reliable accuracy measures to reduce the need for human involvement in error correction and make human review more efficient. Here, we describe one step toward that goal: a basecalling program for automated sequencer traces, phred, with improved
The selfduality equations on a Riemann surface
 Proc. Lond. Math. Soc., III. Ser
, 1987
"... In this paper we shall study a special class of solutions of the selfdual YangMills equations. The original selfduality equations which arose in mathematical physics were defined on Euclidean 4space. The physically relevant solutions were the ones with finite action—the socalled 'instanton ..."
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Cited by 524 (6 self)
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In this paper we shall study a special class of solutions of the selfdual YangMills equations. The original selfduality equations which arose in mathematical physics were defined on Euclidean 4space. The physically relevant solutions were the ones with finite action—the socalled &apos
Bayes Factors
, 1995
"... In a 1935 paper, and in his book Theory of Probability, Jeffreys developed a methodology for quantifying the evidence in favor of a scientific theory. The centerpiece was a number, now called the Bayes factor, which is the posterior odds of the null hypothesis when the prior probability on the null ..."
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Cited by 1766 (74 self)
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In a 1935 paper, and in his book Theory of Probability, Jeffreys developed a methodology for quantifying the evidence in favor of a scientific theory. The centerpiece was a number, now called the Bayes factor, which is the posterior odds of the null hypothesis when the prior probability on the null
The STATEMATE Semantics of Statecharts
, 1996
"... This article describes the semantics of the language of statecharts as implenented in the STATEMATE system [Harel et al. 1990; Harel and Politi 1996]. The initial version of this semantics was developed by a team about.10 years ago. With the added experience of the users of the system it has since b ..."
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Cited by 651 (12 self)
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been extended and modified. This executable semantics has been in operation in driving the simulation, dynamic tests, and code generation tDols of STATEMATE since 1987, and a technical report describing it has been available from iLogix, Inc. since 1989. We have now decided to revise and publish
Differential privacy . . .
, 2009
"... We show by means of several examples that robust statistical estimators present an excellent starting point for differentially private estimators. Our algorithms use a new paradigm for differentially private mechanisms, which we call ProposeTestRelease (PTR), and for which we give a formal definit ..."
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Cited by 629 (10 self)
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We show by means of several examples that robust statistical estimators present an excellent starting point for differentially private estimators. Our algorithms use a new paradigm for differentially private mechanisms, which we call ProposeTestRelease (PTR), and for which we give a formal
Crowds: Anonymity for Web Transactions
 ACM Transactions on Information and System Security
, 1997
"... this paper we introduce a system called Crowds for protecting users' anonymity on the worldwide web. Crowds, named for the notion of "blending into a crowd", operates by grouping users into a large and geographically diverse group (crowd) that collectively issues requests on behalf o ..."
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Cited by 831 (12 self)
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this paper we introduce a system called Crowds for protecting users' anonymity on the worldwide web. Crowds, named for the notion of "blending into a crowd", operates by grouping users into a large and geographically diverse group (crowd) that collectively issues requests on behalf
Instancebased learning algorithms
 Machine Learning
, 1991
"... Abstract. Storing and using specific instances improves the performance of several supervised learning algorithms. These include algorithms that learn decision trees, classification rules, and distributed networks. However, no investigation has analyzed algorithms that use only specific instances to ..."
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Cited by 1359 (18 self)
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to solve incremental learning tasks. In this paper, we describe a framework and methodology, called instancebased learning, that generates classification predictions using only specific instances. Instancebased learning algorithms do not maintain a set of abstractions derived from specific instances
A translation approach to portable ontology specifications
 KNOWLEDGE ACQUISITION
, 1993
"... To support the sharing and reuse of formally represented knowledge among AI systems, it is useful to define the common vocabulary in which shared knowledge is represented. A specification of a representational vocabulary for a shared domain of discourse — definitions of classes, relations, functions ..."
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Cited by 3282 (9 self)
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, functions, and other objects — is called an ontology. This paper describes a mechanism for defining ontologies that are portable over representation systems. Definitions written in a standard format for predicate calculus are translated by a system called Ontolingua into specialized representations
BoosTexter: A Boostingbased System for Text Categorization
"... This work focuses on algorithms which learn from examples to perform multiclass text and speech categorization tasks. Our approach is based on a new and improved family of boosting algorithms. We describe in detail an implementation, called BoosTexter, of the new boosting algorithms for text catego ..."
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Cited by 658 (20 self)
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This work focuses on algorithms which learn from examples to perform multiclass text and speech categorization tasks. Our approach is based on a new and improved family of boosting algorithms. We describe in detail an implementation, called BoosTexter, of the new boosting algorithms for text
The program dependence graph and its use in optimization
 ACM Transactions on Programming Languages and Systems
, 1987
"... In this paper we present an intermediate program representation, called the program dependence graph (PDG), that makes explicit both the data and control dependence5 for each operation in a program. Data dependences have been used to represent only the relevant data flow relationships of a program. ..."
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Cited by 989 (3 self)
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In this paper we present an intermediate program representation, called the program dependence graph (PDG), that makes explicit both the data and control dependence5 for each operation in a program. Data dependences have been used to represent only the relevant data flow relationships of a program
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