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BioPortal: A Web Repository for Biomedical Ontologies and Data Resources [Demonstration]

by Natalya F. Noy, Nigam H. Shah, Benjamin Dai, Michael Dorf, Nicholas Griffith, Clement Jonquet, Michael J. Montegut, Daniel L. Rubin, Cherie Youn, Mark A. Musen
"... Biomedical ontologies provide essential domain knowledge to drive data integration, information retrieval, data annotation, naturallanguage processing, and decision support. The National Center for Biomedical Ontology is developing BioPortal, a Web-based system that serves as a repository for biomed ..."
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Biomedical ontologies provide essential domain knowledge to drive data integration, information retrieval, data annotation, naturallanguage processing, and decision support. The National Center for Biomedical Ontology is developing BioPortal, a Web-based system that serves as a repository

BioPortal: A Web Portal to Biomedical Ontologies

by Daniel L. Rubin, Dilvan A. Moreira, Pradip P. Kanjamala, Mark A. Musen - in AAAI Spring Symposium Series, Symbiotic Relationships between Semantic Web and Knowledge Engineering. 2008
"... Ontologies are becoming critical to e-Science, but there are challenges for the community to find the ontologies relevant to their work, to declare mappings among related ontolo-gies, and to provide feedback or critiques to ontology devel-opers. We have created BioPortal, a Web portal to a virtual l ..."
Abstract - Cited by 7 (0 self) - Add to MetaCart
these knowledge resources, BioPortal provides a suite of Web services, including ontology categorization, term search, graphical ontology visualization, and ontology ver-sion histories. As development of the knowledge resources

BioPortal: ontologies and integrated data resources at the click of a mouse

by Natalya F. Noy, Nigam H. Shah, Patricia L. Whetzel, Benjamin Dai, Michael Dorf, Nicholas Griffith, Clement Jonquet, Daniel L. Rubin, Margaret-anne Storey, Christopher G. Chute, Mark A. Musen - Nucleic Acids Res , 2009
"... at the click of a mouse ..."
Abstract - Cited by 123 (30 self) - Add to MetaCart
at the click of a mouse

Using SPARQL to Query BioPortal

by Manuel Salvadores, Matthew Horridge, Paul R. Alex, Ray W. Fergerson, Mark A. Musen, Natalya F. Noy
"... edu Abstract. BioPortal is a repository of biomedical ontologies—the largest such repository, with more than 300 ontologies to date. This set includes ontologies that were developed in OWL, OBO and other languages, as well as a large number of medical terminologies that the US National Library of Me ..."
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edu Abstract. BioPortal is a repository of biomedical ontologies—the largest such repository, with more than 300 ontologies to date. This set includes ontologies that were developed in OWL, OBO and other languages, as well as a large number of medical terminologies that the US National Library

NCBO BioPortal GALAXY Platform NCBO-Galaxy: bridging the BioPortal web services and the Galaxy platform

by Jose Antonio, Miñarro Giménez, Mikel Egaña Aranguren, Jesualdo Tomás, Erick Antezana
"... BioPortal (Noy et al. (2009)) is a web-based application for searching, sharing, visualizing, and analyzing bio-ontologies. It has become one of the major, centralised bio-ontologies repositories. BioPortal not only hosts a considerable number of important ..."
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BioPortal (Noy et al. (2009)) is a web-based application for searching, sharing, visualizing, and analyzing bio-ontologies. It has become one of the major, centralised bio-ontologies repositories. BioPortal not only hosts a considerable number of important

Ontologies: Silver Bullet for Knowledge Management and Electronic Commerce

by Dieter Fensel , 2007
"... Currently computers are changing from single isolated devices to entry points into a world wide network of information exchange and business transactions called the World Wide Web (WWW). Therefore support in the exchange of data, information, and knowledge exchange is becoming the key issue in cur ..."
Abstract - Cited by 643 (46 self) - Add to MetaCart
Currently computers are changing from single isolated devices to entry points into a world wide network of information exchange and business transactions called the World Wide Web (WWW). Therefore support in the exchange of data, information, and knowledge exchange is becoming the key issue

IOS Press BioPortal as a Dataset of Linked Biomedical

by Terminologies In Rdf, Manuel Salvadores, Paul R. Alex, A Mark A. Musen A, Natalya F. Noy A
"... Abstract. BioPortal is a repository of biomedical ontologies—the largest such repository, with more than 300 ontologies to date. This set includes ontologies that were developed in OWL, OBO and other formats, as well as a large number of medical terminologies that the US National Library of Medicine ..."
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Abstract. BioPortal is a repository of biomedical ontologies—the largest such repository, with more than 300 ontologies to date. This set includes ontologies that were developed in OWL, OBO and other formats, as well as a large number of medical terminologies that the US National Library

Ontologies: Principles, methods and applications

by Mike Uschold, Michael Gruninger - KNOWLEDGE ENGINEERING REVIEW , 1996
"... This paper is intended to serve as a comprehensive introduction to the emerging field concerned with the design and use of ontologies. We observe that disparate backgrounds, languages, tools, and techniques are a major barrier to effective communication among people, organisations, and/or software s ..."
Abstract - Cited by 570 (3 self) - Add to MetaCart
This paper is intended to serve as a comprehensive introduction to the emerging field concerned with the design and use of ontologies. We observe that disparate backgrounds, languages, tools, and techniques are a major barrier to effective communication among people, organisations, and/or software

Proposed SKOS Extensions for BioPortal Terminology Services

by Cui Tao, Natalya F. Noy, Harold R. Solbrig, Nigam H. Shah, Mark A. Musen, Christopher G. Chute
"... Abstract. The National Center for Biomedical Ontology (NCBO) Bio-Portal provides common access for browsing and querying a large set of ontologies that are commonly used in biomedical communities. One of our missions is to align lexical features (i.e., textual definitions) that are commonly used in ..."
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on the Semantic Web. The BioPortal is in the process of adopting SKOS in the backend representation for its content. During this process, we discovered that there exists a set of commonly-used lexical features shared by the biomedical ontologies that SKOS does not yet represent. In this paper, we discuss our

The Ontolingua Server: a Tool for Collaborative Ontology Construction

by Adam Farquhar, Richard Fikes, James Rice - International Journal of Human-Computer Studies , 1996
"... Reusable ontologies are becoming increasingly important for tasks such as information integration, knowledge-level interoperation, and knowledgebase development. We have developed a set of tools and services to support the process of achieving consensus on common shared ontologies by geographically ..."
Abstract - Cited by 473 (6 self) - Add to MetaCart
distributed groups. These tools make use of the worldwide web to enable wide access and provide users with the ability to publish, browse, create, and edit ontologies stored on an ontology server. Users can quickly assemble a new ontology from a library of modules. We discuss how our system was constructed
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