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Fast Parallel Algorithms for Short-Range Molecular Dynamics

by Steve Plimpton - JOURNAL OF COMPUTATIONAL PHYSICS , 1995
"... Three parallel algorithms for classical molecular dynamics are presented. The first assigns each processor a fixed subset of atoms; the second assigns each a fixed subset of inter-atomic forces to compute; the third assigns each a fixed spatial region. The algorithms are suitable for molecular dyn ..."
Abstract - Cited by 622 (6 self) - Add to MetaCart
. The algorithms are tested on a standard Lennard-Jones benchmark problem for system sizes ranging from 500 to 100,000,000 atoms on several parallel supercomputers -- the nCUBE 2, Intel iPSC/860 and Paragon, and Cray T3D. Comparing the results to the fastest reported vectorized Cray Y-MP and C90 algorithm shows

Theoretical improvements in algorithmic efficiency for network flow problems

by Jack Edmonds, Richard M. Karp - , 1972
"... This paper presents new algorithms for the maximum flow problem, the Hitchcock transportation problem, and the general minimum-cost flow problem. Upper bounds on ... the numbers of steps in these algorithms are derived, and are shown to compale favorably with upper bounds on the numbers of steps req ..."
Abstract - Cited by 565 (0 self) - Add to MetaCart
This paper presents new algorithms for the maximum flow problem, the Hitchcock transportation problem, and the general minimum-cost flow problem. Upper bounds on ... the numbers of steps in these algorithms are derived, and are shown to compale favorably with upper bounds on the numbers of steps

Improved Approximation Algorithms for Maximum Cut and Satisfiability Problems Using Semidefinite Programming

by M. X. Goemans, D.P. Williamson - Journal of the ACM , 1995
"... We present randomized approximation algorithms for the maximum cut (MAX CUT) and maximum 2-satisfiability (MAX 2SAT) problems that always deliver solutions of expected value at least .87856 times the optimal value. These algorithms use a simple and elegant technique that randomly rounds the solution ..."
Abstract - Cited by 1231 (13 self) - Add to MetaCart
We present randomized approximation algorithms for the maximum cut (MAX CUT) and maximum 2-satisfiability (MAX 2SAT) problems that always deliver solutions of expected value at least .87856 times the optimal value. These algorithms use a simple and elegant technique that randomly rounds

Dryad: Distributed Data-Parallel Programs from Sequential Building Blocks

by Michael Isard, Mihai Budiu, Yuan Yu, Andrew Birrell, Dennis Fetterly - In EuroSys , 2007
"... Dryad is a general-purpose distributed execution engine for coarse-grain data-parallel applications. A Dryad applica-tion combines computational “vertices ” with communica-tion “channels ” to form a dataflow graph. Dryad runs the application by executing the vertices of this graph on a set of availa ..."
Abstract - Cited by 730 (27 self) - Add to MetaCart
Dryad is a general-purpose distributed execution engine for coarse-grain data-parallel applications. A Dryad applica-tion combines computational “vertices ” with communica-tion “channels ” to form a dataflow graph. Dryad runs the application by executing the vertices of this graph on a set

Understanding and using the Implicit Association Test: I. An improved scoring algorithm

by Anthony G. Greenwald, T. Andrew Poehlman, Eric Luis Uhlmann, Mahzarin R. Banaji, Anthony G. Greenwald - Journal of Personality and Social Psychology , 2003
"... behavior relations Greenwald et al. Predictive validity of the IAT (Draft of 30 Dec 2008) 2 Abstract (131 words) This review of 122 research reports (184 independent samples, 14,900 subjects), found average r=.274 for prediction of behavioral, judgment, and physiological measures by Implic ..."
Abstract - Cited by 592 (92 self) - Add to MetaCart
by Implicit Association Test (IAT) measures. Parallel explicit (i.e., self-report) measures, available in 156 of these samples (13,068 subjects), also predicted effectively (average r=.361), but with much greater variability of effect size. Predictive validity of self-report was impaired for socially

Randomized Algorithms

by Rajeev Motwani , 1995
"... Randomized algorithms, once viewed as a tool in computational number theory, have by now found widespread application. Growth has been fueled by the two major benefits of randomization: simplicity and speed. For many applications a randomized algorithm is the fastest algorithm available, or the simp ..."
Abstract - Cited by 2210 (37 self) - Add to MetaCart
Randomized algorithms, once viewed as a tool in computational number theory, have by now found widespread application. Growth has been fueled by the two major benefits of randomization: simplicity and speed. For many applications a randomized algorithm is the fastest algorithm available

Improved algorithms for optimal winner determination in combinatorial auctions and generalizations

by Tuomas Sandholm, Subhash Suri , 2000
"... Combinatorial auctions can be used to reach efficient resource and task allocations in multiagent systems where the items are complementary. Determining the winners is NP-complete and inapproximable, but it was recently shown that optimal search algorithms do very well on average. This paper present ..."
Abstract - Cited by 598 (55 self) - Add to MetaCart
presents a more sophisticated search algorithm for optimal (and anytime) winner determination, including structural improvements that reduce search tree size, faster data structures, and optimizations at search nodes based on driving toward, identifying and solving tractable special cases. We also uncover

Planning Algorithms

by Steven M LaValle , 2004
"... This book presents a unified treatment of many different kinds of planning algorithms. The subject lies at the crossroads between robotics, control theory, artificial intelligence, algorithms, and computer graphics. The particular subjects covered include motion planning, discrete planning, planning ..."
Abstract - Cited by 1108 (51 self) - Add to MetaCart
This book presents a unified treatment of many different kinds of planning algorithms. The subject lies at the crossroads between robotics, control theory, artificial intelligence, algorithms, and computer graphics. The particular subjects covered include motion planning, discrete planning

The nas parallel benchmarks

by D. H. Bailey, E. Barszcz, J. T. Barton, D. S. Browning, R. L. Carter, R. A. Fatoohi, P. O. Frederickson, T. A. Lasinski, H. D. Simon, V. Venkatakrishnan, S. K. Weeratunga - The International Journal of Supercomputer Applications , 1991
"... A new set of benchmarks has been developed for the performance evaluation of highly parallel supercomputers. These benchmarks consist of ve \parallel kernel " benchmarks and three \simulated application" benchmarks. Together they mimic the computation and data movement characterist ..."
Abstract - Cited by 686 (10 self) - Add to MetaCart
A new set of benchmarks has been developed for the performance evaluation of highly parallel supercomputers. These benchmarks consist of ve \parallel kernel " benchmarks and three \simulated application" benchmarks. Together they mimic the computation and data movement

The Viterbi algorithm

by G. David Forney - Proceedings of the IEEE , 1973
"... vol. 6, no. 8, pp. 211-220, 1951. [7] J. L. Anderson and J. W..Ryon, “Electromagnetic radiation in accelerated systems, ” Phys. Rev., vol. 181, pp. 1765-1775, 1969. [8] C. V. Heer, “Resonant frequencies of an electromagnetic cavity in an accelerated system of reference, ” Phys. Reu., vol. 134, pp. A ..."
Abstract - Cited by 985 (3 self) - Add to MetaCart
vol. 6, no. 8, pp. 211-220, 1951. [7] J. L. Anderson and J. W..Ryon, “Electromagnetic radiation in accelerated systems, ” Phys. Rev., vol. 181, pp. 1765-1775, 1969. [8] C. V. Heer, “Resonant frequencies of an electromagnetic cavity in an accelerated system of reference, ” Phys. Reu., vol. 134, pp. A799-A804, 1964. [9] T. C. Mo, “Theory of electrodynamics in media in noninertial frames and applications, ” J. Math. Phys., vol. 11, pp. 2589-2610, 1970.
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